FC930543

Overview
NameFC930543
Unique NameFC930543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:641..1331. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.571e-68
Identity = 123/216 (56.94%), Postives = 159/216 (73.61%), Query Frame = 2
Query:    2 PYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKP-PSGAVTGRKWCVPKSDASDAALQANIDYVCGTGVDCKPIQAGGPCFNPN 643
            PYF ++P+TLNYALF+PN+G++DPAT  NYT+M DAQ+DA+Y+AMKK+GY DVDI VGE GWP+  +P Q    +  A  +N  +++  +SGKGTPLMPNRTFE Y+F+LF+EN KP  I+E++FGLF PDFTPVYD+G+LR+  +  P  +P    P+  P  KP PSG   G KWCV K  A+   LQ NI+Y CG  VDCKPIQ+GG CF+PN
Sbjct:  207 PYFSYRPETLNYALFRPNSGIYDPATKLNYTSMLDAQMDAIYTAMKKLGYGDVDIAVGEAGWPTQAEPGQIGVGVQEARDFNEGMIRVCSSGKGTPLMPNRTFETYLFSLFDENQKPGPIAERHFGLFNPDFTPVYDLGLLRDGASVAPTPSPN---PSPNPSPKPAPSG---GGKWCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPN 415          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.212e-56
Identity = 108/219 (49.32%), Postives = 145/219 (66.21%), Query Frame = 2
Query:    2 PYFGF----KPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCGTGVDCKPIQAGGPCFNPN 643
            P+F +    +P+TL + LF+PNAG  D  TG  YTNMFDAQ+DAV+SA+K +G+E V+IVV ETGW S GD N+  +++ NA +YNGNL+ H+ S  GTPLMP +  + YIFAL++ENLKP   SE+ FGLFK D + VYDVG+ ++  +                 ++ PSG VT   WCVPK  A++  LQA++D+ CG G+DC  IQ GG CF PN
Sbjct:  202 PFFAYQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVVAETGWASRGDANEVGASVDNAKAYNGNLIAHLRSMVGTPLMPGKPVDTYIFALYDENLKPGPSSERAFGLFKTDLSMVYDVGLAKSSSS-----------------SQTPSGKVTSSGWCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPN 403          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.147e-43
Identity = 94/230 (40.87%), Postives = 132/230 (57.39%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSI-SEQNFGLFKPDFTPVYDVGIL-RNKQAQGPAKAPGGR--PPTEAPVAKPPSGAVTG-------RKWCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNPN 643
            PY+ ++  T    L YALF+ ++ V DPATG  Y+NMFDAQLDA+Y A+  + ++ V ++V E+GWPS G P +  +   NAL+YN NL++HV    GTP  P    +VY+F+LFNEN KP I SE+N+G+F  + T VY +     N     P  +  G    P+ +P+    S    G       +KWC+  S AS   LQ  +D+ CG G VDC  +Q   PCF P+
Sbjct:  202 PYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDAQLDAIYFALTAMSFKTVKVMVTESGWPSKGSPKETAATPENALAYNTNLIRHVIGDPGTPAKPGEEIDVYLFSLFNENRKPGIESERNWGMFYANGTNVYALDFTGENTTPVSPTNSTTGTSPSPSSSPIINGNSTVTIGGGGGGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPD 431          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.348e-37
Identity = 85/221 (38.46%), Postives = 125/221 (56.56%), Query Frame = 2
Query:    2 PYFGFKPQ----TLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQ-PESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSI-SEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNPN 643
            PY+ ++      +L+Y LF+ ++ V DP TG  Y NMFDAQ+DA+Y A+  + +  + I+V ETGWP+ G P +   ++  NA +YN N+++HV + +GTP  P     VYIF+LFNEN K  + SE+N+GLF PD T VY        Q     K+ G    +        + + +   WC+  S AS+  L+  +D+ CG G VDC  IQ   PCF P+
Sbjct:  202 PYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKGSPKEKAAASSDNAETYNSNIIRHVVTNQGTPAKPGEAMNVYIFSLFNENRKAGLDSERNWGLFYPDQTSVY--------QLDFTGKSNGFHSNSSG-----TNSSGSSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPD 409          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 85/192 (44.27%), Postives = 114/192 (59.38%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGK--GTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGILRNKQAQGP---------AKAPGGRPPTE----APVAKPPSGAVTG 517
            P+F +K       L++ LF+PN G+ DPATG +Y NM  AQ+DAVYSA+   G++ + + + ETGWPS GD ++  +   NA  YNGNL+K + SGK   TPL PN    +Y+FALFNENLKP   SE+N+GLFKPD T  Y +G   N   +G          + + GGR  +     +PVA  P  A TG
Sbjct:  204 PFFAYKGNPKEVPLDFVLFQPNQGIVDPATGFHYDNMLFAQIDAVYSALAAAGFKSLRVEISETGWPSKGDDDEVGATPENAKRYNGNLIKMMMSGKKTKTPLKPNNDLSIYVFALFNENLKPGPTSERNYGLFKPDGTQAYSLGFALNDVVRGASGGGTGGGNSSSGGGRDKSPVFPVSPVA--PDSASTG 393          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 72/144 (50.00%), Postives = 99/144 (68.75%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGI 418
            P+F +K       L Y LF+PN G+ DP T  +Y NM  AQ+DA+YSA+K +G+ D+++ + ETGWPS GD N+  ++  NA  YNGNL+K +   KGTP   +   +VY+FALFNENLKP  +SE+N+GLF PD  PVY+VG+
Sbjct:  205 PFFAYKDSPKEVPLEYVLFQPNQGMVDPNTNLHYDNMLFAQVDALYSAIKTLGHTDIEVRISETGWPSKGDENEIGASPENAALYNGNLLKLIQQRKGTPAKQSVPIDVYVFALFNENLKPGPVSERNYGLFYPDGKPVYNVGM 348          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33
Identity = 76/217 (35.02%), Postives = 115/217 (53.00%), Query Frame = 2
Query:   29 LNYALFKP---NAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNP-NMCGHTQH 664
            L+YALFKP   N    D  T   Y+N FDA +DA Y AM  + + ++ ++V E+GWPS G+ N+P++ L NA +YN NL++HV +  GTP  P      YI+ L+NE+ K  +SE+N+GLF  +  PVY + +  +                        +   T + +C  +  A    LQA +D+ CG G +DC PI+ G  C+ P N+  H  +
Sbjct:  220 LDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATYFAMAFLNFTNIPVLVTESGWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAGLSEKNWGLFNANGEPVYVLRLTNSGSVL--------------------ANDTTNQTYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANY 416          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 2
Query:    2 PYFGF----KPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVG--YEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGK-GTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGI---LRNKQAQGPAKAPGG 463
            P+F +    K  +L++ LF+PN G  DP +  +Y NM  AQ+DAVY A+  VG  Y+ V IVV ETGWPS GDP +  +   NA  YNGNL+K + S K  TP+ P     +++FALFNEN+KP   SE+N+GLF PD TPVY +GI     +    G + + GG
Sbjct:  202 PFFAYEENPKHVSLDFVLFQPNQGFTDPGSNFHYDNMLFAQVDAVYHALDAVGISYKKVPIVVSETGWPSNGDPQEVGATCDNARKYNGNLIKMMMSKKMRTPIRPECDLTIFVFALFNENMKPGPTSERNYGLFNPDGTPVYSLGIKTSSTHSSGSGSSNSTGG 366          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 77/200 (38.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:   50 PNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLK-PSISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNPN 643
            P+  + DP T  +YTN+ DA +DA Y +MK +   DV ++V E+GWPS GD  +P + + NA +YN NL+KHV    GTPL P  T  VYI+ LFNE+L+ P +SE ++GLF  + TPVY    L +    G   A                   T + +C+         LQA +D+ CG G  +C  IQ G  C+ PN
Sbjct:  133 PSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRAPPVSEASWGLFYGNSTPVY----LLHVSGSGTFLA----------------NDTTNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPN 312          
BLAST of FC930543 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 78/223 (34.98%), Postives = 117/223 (52.47%), Query Frame = 2
Query:    2 PYFGFKPQT----LNYALFKP---NAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS-ISEQNFGLFKPDFTPVYDVGILRNKQAQGPAKAPGGRPPTEAPVAKPPSGAVTGRKWCVPKSDASDAALQANIDYVCGTG-VDCKPIQAGGPCFNPN 643
            PYF +        L+YALF+P   N    D  T  +YTN+FDA +DA Y AM  + + ++ IVV E+GWPS G P++ ++ + NA +YN NL++HV +  GTP  P      YI+ L+NE+ +P  +SE+N+GLF  + TPVY + +                    A      +   T + +C+ K       LQA +D+ CG G VDC  +  G  C+ P+
Sbjct:  198 PYFDYVQSNGVIPLDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNIPIVVTESGWPSKGGPSEHDATVENANTYNSNLIQHVINKTGTPKHPGTAVTTYIYELYNEDTRPGPVSEKNWGLFYTNGTPVYTLRL--------------------AGAGAILANDTTNQTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPD 400          
The following BLAST results are available for this feature:
BLAST of FC930543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13B_WHEAT9.571e-6856.94Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH2.212e-5649.32Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1312_ARATH2.147e-4340.87Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH1.348e-3738.46Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1311_ARATH5.664e-3644.27Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1314_ARATH1.262e-3550.00Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E132_ARATH2.014e-3335.02Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E1310_ARATH2.909e-3246.06Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E131_ARATH8.463e-3238.50Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH1.444e-3134.98Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34008F09EF PostHarvC1 Citrus clementina cDNA clone C34008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930543 ID=FC930543; Name=FC930543; organism=Citrus clementina; type=EST; length=691bp
CCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGCCTTGTTTAAAC
CAAACGCCGGCGTTTTTGATCCTGCCACTGGGAAGAATTACACCAACATG
TTTGACGCCCAGCTTGATGCTGTTTACTCGGCTATGAAGAAAGTTGGGTA
CGAAGACGTGGACATTGTGGTTGGGGAAACTGGGTGGCCGTCGGCGGGCG
ACCCGAACCAGCCGGAGTCGAACTTGGCCAATGCGCTGTCGTATAATGGG
AATCTCGTGAAGCACGTGAACTCTGGAAAAGGAACGCCTCTGATGCCTAA
CAGGACTTTTGAGGTGTACATTTTCGCCTTATTCAACGAGAACCTGAAAC
CATCCATATCGGAGCAGAATTTCGGGTTGTTTAAACCCGATTTTACGCCG
GTTTATGATGTGGGCATTTTGCGTAATAAACAGGCACAGGGTCCCGCGAA
AGCACCAGGTGGAAGACCTCCCACCGAAGCTCCAGTTGCAAAACCGCCAT
CAGGCGCGGTCACGGGCAGGAAATGGTGCGTGCCAAAATCAGACGCCTCG
GATGCAGCGCTGCAGGCAAACATAGACTACGTGTGCGGCACTGGCGTGGA
TTGCAAGCCTATACAAGCCGGTGGGCCCTGCTTCAATCCGAACATGTGCG
GTCACACGCAGCATACGCCATGACGCCTTCTATCAGCCACG
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