FC930544

Overview
NameFC930544
Unique NameFC930544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930544_ssr487 microsatellite FC930544_ssr487:487..498. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:20..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.830e-64
Identity = 122/164 (74.39%), Postives = 137/164 (83.54%), Query Frame = 2
Query:  191 LSTSAAPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            L ++A+   H+R + ++AAA+  PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGII   +C++ +  G
Sbjct:   12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPG 175          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 128/193 (66.32%), Postives = 141/193 (73.06%), Query Frame = 2
Query:  107 MARQALAKLIGSIG--CRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            M+RQ +A+LIGS+    RR ST  S   +    S      SR + S       AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGII   +C++ +  G
Sbjct:    1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDPHPPA-AVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 190          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.686e-60
Identity = 126/196 (64.29%), Postives = 142/196 (72.45%), Query Frame = 2
Query:  107 MARQALAKLIGSI-----GCRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            M+RQ + +L+GS+     GC   S   S++             SR +G++      AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGII   +C++ +  G
Sbjct:    1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTSL---------VQSRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 185          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.251e-49
Identity = 94/147 (63.95%), Postives = 111/147 (75.51%), Query Frame = 2
Query:  239 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            S  AS+  +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGIIN  +C++ +  G
Sbjct:   42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPG 188          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 194.126 bits (492), Expect = 6.207e-49
Identity = 95/173 (54.91%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  161 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            S++S ++  RL +       +     S  AS+  +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+IN  +C++ +  G
Sbjct:   16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPG 188          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 93/147 (63.27%), Postives = 110/147 (74.83%), Query Frame = 2
Query:  239 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            S  AS+  ++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+IN  +C++ +  G
Sbjct:   42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPG 188          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.080e-48
Identity = 93/147 (63.27%), Postives = 109/147 (74.15%), Query Frame = 2
Query:  239 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            S  AS+  ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+IN  +C++ +  G
Sbjct:   42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPG 188          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 4.023e-48
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 2
Query:  161 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            S +S ++  RL + A     +     S   S+  ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+IN  +C++ +  G
Sbjct:   16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPG 188          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 89/153 (58.17%), Postives = 114/153 (74.51%), Query Frame = 2
Query:  221 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            +R +G    +++P+V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG +HL LPVFN+V EAK  T ANA+VIYVPPP             ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGII   +C++ +  G
Sbjct:    8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPG 160          
BLAST of FC930544 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 2
Query:  278 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIINLEKCRLALCLG 679
            ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF SVAEAK  T  +A+VIYVPPP             + L+VCITEG+PQHDMV+VK AL  QSK+RL+GPNCPGII  E+C++ +  G
Sbjct:   37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPG 170          
The following BLAST results are available for this feature:
BLAST of FC930544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_ORYSJ6.830e-6474.39Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH1.575e-6066.32Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_ARATH2.686e-6064.29Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_RAT1.251e-4963.95Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE6.207e-4954.91Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_HUMAN8.106e-4963.27Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG3.080e-4863.27Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN4.023e-4854.91Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DICDI4.448e-4758.17Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME7.101e-4562.69Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionC34008F10EF PostHarvC1 Citrus clementina cDNA clone C34008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930544 ID=FC930544; Name=FC930544; organism=Citrus clementina; type=EST; length=718bp
GGTGCGTTCTTCTGAGAATCTTTTTCTTCAATATATTTTGGAAAAAAAGA
GAGAGACGAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTG
AATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATG
TCGCAGACCCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGT
CGGCGGCGCCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCG
TCTCAGCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGG
CATCACCGGAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACG
GCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCAC
TTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAA
GGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTA
TCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAA
GGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCA
ATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAACCTGG
AGAAATGTAGATTGGCATTATGCCTGGGTATATTCACAACCTGGGCGGGN
TGGAATGTTTCTCGATCT
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