FC930546

Overview
NameFC930546
Unique NameFC930546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:21..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.262e-77
Identity = 141/195 (72.31%), Postives = 167/195 (85.64%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G R L LV+PF+  LPEV SA +KIP  EK+++T I +F++LVC Q+PLYGI +T  +DPFYWMRVILASN+GT+MELGI+PIVTSGLVMQLLAGSKII+VD   +ED+ L  GAQKLLGILI IGE+VAYV+SGMYG V  LGAGNAILII+QL  +GIIVICLDELLQKGYG+GS ISLFIATN+CESI+WK+
Sbjct:    5 GVRFLTLVKPFMFALPEVSSATKKIPVNEKLLWTSIVVFLYLVCCQIPLYGITNTKSSDPFYWMRVILASNKGTLMELGISPIVTSGLVMQLLAGSKIIDVDQGTKEDKTLFQGAQKLLGILITIGESVAYVLSGMYGDVKDLGAGNAILIIVQLFTSGIIVICLDELLQKGYGIGSAISLFIATNVCESIVWKS 199          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.132e-74
Identity = 134/194 (69.07%), Postives = 162/194 (83.51%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWK 718
            GFR L +V+PF   +PEV   DRKIPFREKV++T I LFIFLVCSQ+PLYGI ST  +DPFYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G+LI +G+ VAY+ SG YG  + LG GN  LI+LQL FAGIIV+ LDELLQKGYG+GSGISLFIATNICE+I+WK
Sbjct:    2 GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGISLFIATNICETIVWK 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 276.944 bits (707), Expect = 7.339e-74
Identity = 135/195 (69.23%), Postives = 166/195 (85.13%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 276.944 bits (707), Expect = 7.339e-74
Identity = 135/195 (69.23%), Postives = 166/195 (85.13%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.585e-74
Identity = 135/195 (69.23%), Postives = 165/195 (84.62%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L  ++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.585e-74
Identity = 135/195 (69.23%), Postives = 165/195 (84.62%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L  ++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.252e-73
Identity = 135/195 (69.23%), Postives = 164/195 (84.10%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L  ++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGIAPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.252e-73
Identity = 135/195 (69.23%), Postives = 165/195 (84.62%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S +GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSDMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  S++GAG  ++II+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
BLAST of FC930546 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 134/195 (68.72%), Postives = 166/195 (85.13%), Query Frame = 2
Query:  137 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKA 721
            G + L +++PF   LPE+Q  +RKI FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G++I IG+A+ YVM+GMYG  +++GAG  +LII+QL  AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKA
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA 195          
The following BLAST results are available for this feature:
BLAST of FC930546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_PYRSA9.262e-7772.31Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_DICDI1.132e-7469.07Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_HARAN7.339e-7469.23Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DISMA7.339e-7469.23Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_PAGBO9.585e-7469.23Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN9.585e-7469.23Protein transport protein Sec61 subunit alpha OS=N... [more]
SC61A_BOVVA1.252e-7369.23Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A2_ONCMY1.252e-7369.23Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_GADOC1.635e-7368.72Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A2_PONAB1.635e-7368.72Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionC34008F12EF PostHarvC1 Citrus clementina cDNA clone C34008F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930546 ID=FC930546; Name=FC930546; organism=Citrus clementina; type=EST; length=722bp
GATAATATTTCAACGTTCAACCCTCTATCCTCCATCTTGCATCGTTGGAG
TTGGTGTTGCCACTGATTCCGAGCCTCTGCTCAAAATCAAAGCTTGTCGA
TCTATTCAGATCTGCTCATTTTTGAAAATGGGAGGAGGATTTAGAGTGCT
GCATTTGGTGAGACCGTTTCTTCCATTTTTGCCGGAGGTTCAGTCAGCTG
ACAGGAAAATTCCCTTCCGAGAGAAGGTGATCTACACTGTCATTTCGCTT
TTCATCTTTCTGGTATGCAGTCAGCTTCCACTTTATGGCATCCATTCCAC
CACCGGTGCTGATCCCTTTTATTGGATGCGTGTTATTCTTGCATCAAACC
GGGGAACTGTGATGGAACTTGGGATTACCCCCATTGTGACTTCTGGACTT
GTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTGGATAACAATGT
TCGTGAGGATCGTGCACTCTTAAATGGGGCACAGAAGCTGTTGGGTATCC
TGATTGCTATCGGTGAGGCTGTTGCCTACGTGATGTCGGGGATGTATGGA
AGTGTTAGCCAGCTTGGTGCTGGGAATGCTATTCTCATAATCCTCCAACT
TTGCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGG
GATATGGTTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATCTGT
GAAAGCATTATTTGGAAAGCTT
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