FC930549

Overview
NameFC930549
Unique NameFC930549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:957..1630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 369.392 bits (947), Expect = 9.612e-102
Identity = 195/224 (87.05%), Postives = 204/224 (91.07%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            CKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK TLDNDEEKVG
Sbjct:  272 CKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVG 495          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.388e-100
Identity = 193/224 (86.16%), Postives = 203/224 (90.62%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            CKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK  LDNDEEKVG
Sbjct:  272 CKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVG 495          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 5.831e-99
Identity = 190/224 (84.82%), Postives = 205/224 (91.52%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            CKLLLVDKKITNARDLIN+LEDAIR  +PI+IIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGTVIR+EVGL LDK  KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+  IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK+TL NDEEKVG
Sbjct:  266 CKLLLVDKKITNARDLINILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVG 489          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 1.876e-97
Identity = 186/224 (83.04%), Postives = 203/224 (90.62%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            CKLLLVDKKITNARDLINVLE+AIRG YPILIIAEDIEQEALATLVVNKLRG+LKI A+KAPGFGERK+QYLDDIAILTGGTVIRDEVGL LDK    VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVAQI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL++KVDAIK+TL+NDE+KVG
Sbjct:  171 CKLLLVDKKITNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQYLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVG 394          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.009e-79
Identity = 149/224 (66.52%), Postives = 182/224 (81.25%), Query Frame = 2
Query:    2 CKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            CK+LLVDKKI+ ARD+I +LE AIRG YP+LI+AE++EQEALATLVVNKLRG LK+ A+KAPGFGER+S YL+DIAILTGGTV+ DE+G++L++    VLG A+K+ +TK+ TT+VGDGST   V+ RV QIR L    +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA          CTLLRLS KVD IK  + + E+++G
Sbjct:  102 CKILLVDKKISTARDIITILESAIRGNYPLLIMAEEVEQEALATLVVNKLRGTLKVVAIKAPGFGERRSSYLEDIAILTGGTVVGDEMGVSLEQATDAVLGTAAKITITKERTTVVGDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMG 325          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.450e-65
Identity = 127/223 (56.95%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    5 KLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            ++L+ DKKI++ +DL+ VLE   R    +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+   L DIAILTGG +I +EVGL+L+ V  +++G   K+ + KD TTIV DG T + V KR+AQIR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ LS+KV+ +K +L+N+EEK+G
Sbjct:  217 RILITDKKISSIQDLVPVLEKVARAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIG 439          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.093e-64
Identity = 126/223 (56.50%), Postives = 165/223 (73.99%), Query Frame = 2
Query:    5 KLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            +LL+V+KKI++ +DL+ +LE   R   P+LIIAED+E EALATLVVNKLRG L + A+KAPGFGER+   L DIA+LTGG VI ++VGL LDKV  E+LG A KV ++KD TTIV + +    V KRV Q+R  ++  + +Y++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+  ++++K  L  DEEKVG
Sbjct:  217 RLLIVNKKISSLQDLVGILEQVARAGQPLLIIAEDLEGEALATLVVNKLRGVLNVVAIKAPGFGERRQAMLQDIAVLTGGQVISEDVGLTLDKVDLEMLGTARKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQL-KDEEKVG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.734e-63
Identity = 124/223 (55.61%), Postives = 163/223 (73.09%), Query Frame = 2
Query:    5 KLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+G
Sbjct:  217 RILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.734e-63
Identity = 124/223 (55.61%), Postives = 163/223 (73.09%), Query Frame = 2
Query:    5 KLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+G
Sbjct:  217 RILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIG 438          
BLAST of FC930549 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.559e-62
Identity = 127/222 (57.21%), Postives = 163/222 (73.42%), Query Frame = 2
Query:    8 LLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 673
            LL+   KI++ +DL+ +LE   R   P+L+IAED+E EALATLVVN+LRG L   A+KAP FG+R+   L+DIAILTGG +I ++VG+ LDKV  +++G A K+ +TKD TTIV DGST+ AV KRVAQIR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K  L N EE+VG
Sbjct:  219 LLITSNKISSLQDLVPILERVAREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVG 439          
The following BLAST results are available for this feature:
BLAST of FC930549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH9.612e-10287.05RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.388e-10086.16RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA5.831e-9984.82RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.876e-9783.04RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE3.009e-7966.52RuBisCO large subunit-binding protein subunit beta... [more]
CH601_TRIEI1.450e-6556.9560 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ACAM12.093e-6456.5060 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_ANAVT6.734e-6355.6160 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP6.734e-6355.6160 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH602_SYNJB2.559e-6257.2160 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34008G03EF PostHarvC1 Citrus clementina cDNA clone C34008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930549 ID=FC930549; Name=FC930549; organism=Citrus clementina; type=EST; length=674bp
CTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAGGGACCTTA
TCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTTTGATTATT
GCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTGAACAAGCT
GAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGAGAGC
GCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTA
ATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCT
AGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGG
GGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGA
ACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGA
AAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTC
AAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTT
AATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATG
TACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTG
ATAATGATGAAGAAAAGGTTGGAG
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