FC930567

Overview
NameFC930567
Unique NameFC930567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.039e-78
Identity = 142/180 (78.89%), Postives = 164/180 (91.11%), Query Frame = 2
Query:  170 IAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +A+RRA+ AQKILQRKG+AS LE+E +K KLAE KPSLLV+A+QLKRD PE+S TEQI+ QEKEM+E+LSD+KTLMSVRELAKGITYT+PLLTGWKPPL IR+MS K  DLIRKQWHIIV+G+DIPPPIKNFKDM+FP P+L  LK KGIVQPTPIQVQGLPV+L+GRDMIGIAFTGSG+
Sbjct:   17 VAERRAIAAQKILQRKGKASELEEEADKEKLAEAKPSLLVQATQLKRDVPEVSATEQIILQEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGK 196          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.053e-62
Identity = 122/205 (59.51%), Postives = 150/205 (73.17%), Query Frame = 2
Query:  167 PIAKRRAMEAQKI----LQRKGQASTLEDELEKSKL--------------------AEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            P+AKRRAMEA ++    L +    S+   E                          A  KPSLLVKA+QLKR  PE++ TEQ++ QEKEMIE+LSDRKTLMSVRELAKGITY+DPL TGWKPPL +RRM +   D +R++WHI+VDG+D+PPP ++F+D+R PEP+L+KL+ KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG+
Sbjct:   28 PVAKRRAMEADRLRRLRLSKPAPPSSSAAEAASDLPPPPPPPPNQPSAGGGGGGLEASAKPSLLVKATQLKRAAPEVTHTEQLIMQEKEMIEHLSDRKTLMSVRELAKGITYSDPLKTGWKPPLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGK 232          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.468e-56
Identity = 107/193 (55.44%), Postives = 145/193 (75.13%), Query Frame = 2
Query:  167 PIAKRRAMEAQKILQRKGQASTLEDEL----------EKSKLAEV--KPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            P+AKRRAMEA+++ +     +T    +              + EV  K SLLVKA++LKR+ PE++P E+++QQE+EMIE+LSDRK LM V E+AKGI+Y++P+ TGW+PPL +RRM +   D +R+ WHI+VDG+D+PPP ++F D+R PEPIL+ L+ KGI +PTPIQVQGLPV LSGRDMIGIAFTGSG+
Sbjct:   31 PVAKRRAMEAERLRRATKPPTTNAVAVAAPPPPPRSTSSPAVGEVAVKTSLLVKATKLKREAPEVTPAERLLQQEREMIEHLSDRKALMPVGEIAKGISYSEPITTGWRPPLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGK 223          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.124e-47
Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 2
Query:  356 KEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            K M+E+LSD+K LMSV ELA+GITYT+PL T WKPPL +R+MS K  DLIRKQWHI V+GEDIPPPIKNF DM+FP P+L+ LK KGI+ PTPIQVQGLPVVLSGRDMIGIAFTGSG+
Sbjct:   30 KGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.334e-41
Identity = 85/194 (43.81%), Postives = 134/194 (69.07%), Query Frame = 2
Query:  167 PIAKRRAMEAQKILQRKGQASTLEDELEKSKLA-----------EVKPSLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            P+ +RR +  QK+LQR+ + +T E++ +                +   SLL +   LK   +  + S  E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W PP  +  MS++  + +RK++HI+V+G+ IPPPIK+FK+M+FP  IL+ LK KGI+ PTPIQ+QG+P +LSGRDMIGIAFTGSG+
Sbjct:   38 PLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGK 231          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.475e-40
Identity = 84/194 (43.30%), Postives = 132/194 (68.04%), Query Frame = 2
Query:  167 PIAKRRAMEAQKILQRKGQASTLEDELEKSKLA-----------EVKPSLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            P+ +RR +  QK+LQR+ + +  E++ +                +   SLL +   LK   +  + S  E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W PP  +  MS++  + +RK++HI+V+G+ IPPPIK+FK+M+FP  IL+ LK KGI  PTPIQ+QG+P +LSGRDMIGIAFTGSG+
Sbjct:   38 PLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGK 231          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  212 RKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            RK   S L+   E  K+AE K               ++S  E+ +++E++++E+++ +K LM V ELAKGI Y  P+ T WKPP  IR MS++  + +R +  I+V+GE   PPI++F++M+FP+ IL  L AKGI  PTPIQVQGLP VL+GRD+IGIAFTGSG+
Sbjct:   77 RKYNISLLDQHTELKKIAEAK---------------KLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGK 227          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.755e-31
Identity = 63/133 (47.37%), Postives = 94/133 (70.68%), Query Frame = 2
Query:  311 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            ++ +I   +++  +E +++++L   K L+SV++ AK + YTD + T W+ P  I    +K    +R Q +II DGEDIPPPI  FK+M+ P+P++  L  KGI +P+PIQVQGLPV+LSGRDMIGIA+TGSG+
Sbjct:  140 EENKIKEEKRLDMEESDILKSLKTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGK 272          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  479 MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            M+++  +  R++  I V+G D+P P++ F+D+ FPE +L+++   G V+PTPIQ QG P+ L GRD+IGIA TGSG+
Sbjct:   65 MTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGK 141          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +  M+    +  RK   I V+G+DIP P+K+F+D+ FP+ +L+++K  G  +PTPIQ QG P+ + GRD+IGIA TGSG+
Sbjct:   70 VAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149          
The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RH35_ARATH3.039e-7878.89DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
RH35A_ORYSJ3.053e-6259.51DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]
RH35B_ORYSJ1.468e-5655.44DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
RH43_ARATH2.124e-4776.27Putative DEAD-box ATP-dependent RNA helicase 43 OS... [more]
DDX41_MOUSE1.334e-4143.81Probable ATP-dependent RNA helicase DDX41 OS=Mus m... [more]
DDX41_HUMAN1.475e-4043.30Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
DDX41_DROME1.094e-3546.39ATP-dependent RNA helicase abstrakt OS=Drosophila ... [more]
DDX41_DICDI4.755e-3147.37Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
RH20_ORYSJ1.642e-1546.75DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH20_ARATH2.800e-1546.25DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34008H09EF PostHarvC1 Citrus clementina cDNA clone C34008H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bp
GATTGACACTTAAAAAAATTGTTTTACGAATTGGAAATTAATAAATTTTC
TTTCGCCTCTGTTTTAGGGCTCCCGCAAAATTAGGGTTTACTTCATTTGT
TCGTGAATCAAGCTTTTTCTTGGAGATTAAATGATGGAGGAAGAAGATGA
TTACGTCGAGTATGTTCCAATCGCAAAGCGACGAGCAATGGAAGCTCAAA
AAATACTCCAGCGCAAGGGGCAGGCGTCTACGCTTGAGGACGAGCTTGAG
AAGTCTAAACTTGCTGAAGTCAAACCTAGTCTTCTTGTTAAAGCATCCCA
GCTTAAGCGTGATCAGCCTGAAATTAGTCCCACGGAACAGATTGTGCAAC
AAGAGAAGGAGATGATTGAGAACTTGTCAGATAGGAAGACGCTGATGTCA
GTTCGGGAGTTAGCTAAGGGGATTACTTATACGGATCCTTTGTTGACTGG
ATGGAAACCGCCATTGCCTATTAGAAGAATGTCAAAGAAAGCGTGTGATT
TAATTCGAAAACAGTGGCATATTATTGTTGATGGTGAAGATATTCCTCCA
CCGATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCAATTTTGAAGAA
GTTGAAAGCCAAAGGGATTGTGCAACCAACCCCAATTCAGGTGCAGGGTC
TTCCTGTTGTTCTATCTGGAAGGGACATGATTGGAATTGCGTTTACGGGA
TCAGGGAGACATTGGTGTTTGTATTGCCATGATCATGATAGCGA
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