FC930568

Overview
NameFC930568
Unique NameFC930568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930568_ssr4 microsatellite FC930568_ssr4:4..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15178 contig Ccv1_Contig15178:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930568 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.352e-36
Identity = 85/177 (48.02%), Postives = 109/177 (61.58%), Query Frame = 2 
Query:  173 GSFPPHNTDSC-------FLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKS-GSCKMLEPVXXXXXXXXXXERNRGKLAGSTSTAEA-MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGGMYDPS 676
            GS PP ++ S        FL  H  Q+Q          + WCLP ++D +ADD    VMA GK  G  KMLE V          ER +GK           M+QEIW+EFP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPS
Sbjct:   22 GSPPPPSSSSSLSSSSPSFLVLHHPQYQ----------NGWCLPCIEDTSADDCCDIVMAGGKRPGIFKMLETVKPPVKRTRK-ERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPS 187

HSP 2 Score: 22.7126 bits (47), Expect = 1.352e-36
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 3 
Query:  678 KEWHHPTISSL 710
            K+WHHP I +L
Sbjct:  189 KKWHHPIIPAL 199
The following BLAST results are available for this feature:
BLAST of FC930568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBX6_ARATH1.352e-3648.02F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
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Properties
Property NameValue
Genbank descriptionC34008H10EF PostHarvC1 Citrus clementina cDNA clone C34008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930568 ID=FC930568; Name=FC930568; organism=Citrus clementina; type=EST; length=712bp
GGGGAGAGAGAGAGAGAGAACACAAACAAACACCAACACGGAGAAAGAAA
GGGTGGGGGGTGGGGTGTTGTGTGGGTTTTTGGCTTTCCGTCCGGTCAGA
GTCCGGGGCATGGGAGAGCTGGCCATGCTTAGGCAGCTCATCGGTCAGCT
TCAGCAGTTCCTCCAACTCTACGGTTCTTTTCCTCCTCATAATACCGATT
CCTGTTTCCTCTATTTTCACTCTCATCAACATCAACAACTGCCCGAAGAA
CAAACGCACCAGCTTCACAGATGGTGCTTGCCCGAAGTCGATGACGGTGC
TGCGGATGATTATTACGGTTTTGTGATGGCAGCTGGAAAATCTGGAAGCT
GTAAGATGTTGGAGCCTGTCAAACCTCCTCCTTCTAAGAGATCTCGAAAG
GAGCGGAACCGAGGAAAATTGGCTGGATCCACCAGTACAGCTGAGGCTAT
GGAACAAGAAATTTGGAAAGAGTTCCCAGAAGACCTTTATGAAGCTGTCA
TTGCACGACTTCCTATTGCCACCTTCTTTCGCTTCCGTTCAGTTTGCCAG
AAATGGAATTCCTTACTGAAATCACATAGTTTCTCTCAGCATTGTGCCCA
AGTCCCGCAAGGAATTCCCTGGTTTTATACCATTACTCATGAAAATGTGA
ATTCTGGAGGCATGTATGATCCTTCCTAAAGAATGGCACCATCCTACTAT
ATCTTCTCTGCC
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