FC930569

Overview
NameFC930569
Unique NameFC930569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930569_ssr30 microsatellite FC930569_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:70..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PEA (Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.891e-83
Identity = 152/195 (77.95%), Postives = 169/195 (86.67%), Query Frame = 2
Query:   95 ASAALTFPVLRRSITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            +S++ + P   R I+CQASSA +A +++  K      DF+HI DFDK TI+KILDRA EVK LLKSGDR+F PF+GKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLAKYA+VPVINGLTDYNHP QIMADALT+IEH+GR EGTKVVYVGDGN
Sbjct:   37 SSSSSSSPSPLRRISCQASSAPAAESTLTAKVGNGLKDFIHIDDFDKETILKILDRAIEVKTLLKSGDRTFRPFEGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLAKYASVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGN 231          

HSP 2 Score: 27.7202 bits (60), Expect = 3.891e-83
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  682 IVHSWLLMASVIP 720
            IVHSWLL+A+V+P
Sbjct:  233 IVHSWLLLAAVVP 245          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_ARATH (Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.127e-79
Identity = 149/207 (71.98%), Postives = 174/207 (84.06%), Query Frame = 2
Query:   74 SRFPATS----ASAALTFPVLRR-SITCQASSATSAPNSIHGKPKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            S FP T+    ++ +L  P L R  ++CQASS TS  +    K K++  DFL I DFD ATI  ILD+A+EVKALLKSG+R++LPFKGK+MSMIFAKPSMRTRVSFETGF LLGGHA+YLGP+DIQMGKREETRD ARVL RYNDIIMARVF HQDILDLA Y++VPV+NGLTD+NHPCQIMADALT+IEH+G++EGTKVVYVGDGN
Sbjct:   25 SFFPGTTLRRFSAVSLPSPALPRLRVSCQASSVTSPSSPSDVKGKSDLKDFLAIDDFDTATIKTILDKASEVKALLKSGERNYLPFKGKSMSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGN 231          

HSP 2 Score: 25.409 bits (54), Expect = 1.127e-79
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  682 IVHSWLLMASVIP 720
            +VHSWL +ASVIP
Sbjct:  233 MVHSWLELASVIP 245          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_ANOFW (Ornithine carbamoyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=argF PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.650e-41
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            DFL ++D+ K  I  +L  A E+K   ++G+R + P  GKT++MIF KPS RTRVSFE G   LGGHA++L   D+Q+G+ E   D ARVL  Y D IM R F H+ + +LA YAT+PVINGLTD +HPCQ +AD LTI E  G+L+G K+ Y+GDGN
Sbjct:   13 DFLTLADYSKEEIEYLLHLAVELKEKQQNGER-YTPLSGKTLAMIFEKPSTRTRVSFEVGMVQLGGHALHLSSRDLQIGRGETIADTARVLSEYVDAIMIRTFEHEKVEELAHYATIPVINGLTDDDHPCQALADLLTIYEVKGKLQGLKLAYIGDGN 169          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PYRHO (Ornithine carbamoyltransferase OS=Pyrococcus horikoshii GN=argF PE=3 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.070e-40
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAKYA+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGN  C
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYAHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_HALWD (Ornithine carbamoyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=arcB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.070e-40
Identity = 85/161 (52.80%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  197 EQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            + ++FL I D     +  ILDRA    AL   GD +  P  G+T+ M+F KPS RTR+SFETG + LGGHAI+LGPDDIQ+G  E   D ARVL  Y D++MAR+F H D+L++A +A +PVINGLTD  HPCQ +AD LTI E  G  +   VV++GDGN
Sbjct:    3 KSSNFLDIDDLTTDELQTILDRAT---ALKHGGDNAQFP--GQTLGMLFEKPSTRTRISFETGMTQLGGHAIFLGPDDIQLGHGEPLSDTARVLSGYVDVVMARLFNHDDLLEIAAHADIPVINGLTDDAHPCQTLADLLTIKEEFGGFDDVTVVWIGDGN 158          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PYRFU (Ornithine carbamoyltransferase OS=Pyrococcus furiosus GN=argF PE=1 SV=6)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 87/158 (55.06%), Postives = 108/158 (68.35%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            D L + D+    I  IL+ A   K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAKYATVPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGN
Sbjct:    9 DLLCLQDYTAEEIWTILETAKMFKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PYRAB (Ornithine carbamoyltransferase OS=Pyrococcus abyssi GN=argF PE=3 SV=4)

HSP 1 Score: 165.236 bits (417), Expect = 3.112e-40
Identity = 86/158 (54.43%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            D L + D+    I  IL+ A  +K   K G    L  +GKT++MIF KPS RTRVSFE   + LGGHA+YL   D+Q+ + E   D ARVL RY D IMARV+ H+D+ DLAKYA+VPVINGL+D++HPCQ +AD +TI E  G ++G KVVYVGDGN
Sbjct:    9 DLLCLQDYTPEEIWTILETAKMLKIWQKIGKPHRL-LEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PYRKO (Ornithine carbamoyltransferase OS=Pyrococcus kodakaraensis GN=argF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 84/158 (53.16%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            D L + DF +  +  IL  A  +K   K G +     +GKT++MIF KPS RTR+SFE G   LGG+ +YL   D+Q+ + E   D ARVL RY D IMARVF H+D+ DLAKYA+VPVINGL+D++HPCQ +AD  TI+E  GR++G K+VYVGDGN
Sbjct:    9 DVLCLQDFTREELETILKTAEMMKIWNKIG-KPHRVLEGKTLAMIFQKPSTRTRISFEVGIYQLGGYGLYLNAQDLQLRRGETIADTARVLSRYVDGIMARVFDHKDVEDLAKYASVPVINGLSDFSHPCQALADYQTILEKKGRIQGLKIVYVGDGN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_CARHZ (Ornithine carbamoyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argF PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 84/161 (52.17%), Postives = 107/161 (66.46%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            DFL ++D     I ++LD A+E+K   K G  + +  KGKT++MIF+K S RTRVSFE G   LGG+ +++   D Q+ + E   D ARVL R  D IM R + H ++ +LA YA VPVINGLTDY HPCQIMAD LTI EH G+L G KV +VGDGN  C
Sbjct:    9 DFLSMNDLTGEEIEEVLDLASELKIRQKKGISTPI-LKGKTLAMIFSKNSTRTRVSFEVGMVQLGGYPLFITATDSQLSRGEPIADTARVLSRMVDGIMIRTYSHSEVEELAYYADVPVINGLTDYEHPCQIMADLLTIKEHKGQLRGLKVAWVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_SYMTH (Ornithine carbamoyltransferase OS=Symbiobacterium thermophilum GN=argF PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.230e-38
Identity = 78/158 (49.37%), Postives = 108/158 (68.35%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            DF+ + D+ +  + ++L+ A   KA LK+G R   P KGK + M FAKPS RTR+SFE G   LGG A++L   D+Q+ + E   D ARV+ R+ D IM R F H+++++LA++AT+PVINGLTD  HPCQ++AD LT +E  G L G K+ YVGDGN
Sbjct:    8 DFISLHDWSRDELEEVLELAMWQKARLKAGIRDE-PLKGKQLGMYFAKPSTRTRLSFEVGIRQLGGDALFLSAHDLQLQRGESIADTARVMSRFLDGIMIRTFSHREVVELAEWATIPVINGLTDEEHPCQVVADLLTALERFGTLPGLKLAYVGDGN 164          
The following BLAST results are available for this feature:
BLAST of FC930569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
OTC_PEA3.891e-8377.95Ornithine carbamoyltransferase, chloroplastic OS=P... [more]
OTC_ARATH1.127e-7971.98Ornithine carbamoyltransferase, chloroplastic OS=A... [more]
OTC_ANOFW1.650e-4153.16Ornithine carbamoyltransferase OS=Anoxybacillus fl... [more]
OTC_PYRHO1.070e-4054.04Ornithine carbamoyltransferase OS=Pyrococcus horik... [more]
OTC_HALWD1.070e-4052.80Ornithine carbamoyltransferase OS=Haloquadratum wa... [more]
OTC_PYRFU1.825e-4055.06Ornithine carbamoyltransferase OS=Pyrococcus furio... [more]
OTC_PYRAB3.112e-4054.43Ornithine carbamoyltransferase OS=Pyrococcus abyss... [more]
OTC_PYRKO5.308e-4053.16Ornithine carbamoyltransferase OS=Pyrococcus kodak... [more]
OTC_CARHZ1.708e-3852.17Ornithine carbamoyltransferase OS=Carboxydothermus... [more]
OTC_SYMTH2.230e-3849.37Ornithine carbamoyltransferase OS=Symbiobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC34008H11EF PostHarvC1 Citrus clementina cDNA clone C34008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930569 ID=FC930569; Name=FC930569; organism=Citrus clementina; type=EST; length=722bp
ATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTTTCT
ACGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCGTCT
GCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGCATC
CTCGGCCACGTCAGCTCCTAATTCCATCCATGGCAAACCAAAAGCAGAGC
AGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAGTGAAG
ATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGATAG
GTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCTAAGC
CATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTGGGA
GGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAGAGA
GGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTATTA
TGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATATGCA
ACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCAAAT
AATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAGGAA
CCAAGGTTGTCTATGTTGGAGATGGAAATACATAGTGCACTCTTGGCTTT
TGATGGCATCAGTTATTCCTTT
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