FC930573

Overview
NameFC930573
Unique NameFC930573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:2..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.685e-92
Identity = 171/206 (83.01%), Postives = 180/206 (87.38%), Query Frame = 2
Query:  125 IDQVQHPSVMQKVAGQLLHSSLSQNIQDYE----RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            +DQVQHPSVMQKVAGQL  SS SQ+ Q Y      P +YQRR AYGNYSNAA Q+P+   A  DLSMVPSTASAICVQAPAEKGF+ FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL    AAGAS
Sbjct:    1 MDQVQHPSVMQKVAGQLFRSSHSQDFQGYNGSFRSPALYQRRAAYGNYSNAALQHPV--RAFGDLSMVPSTASAICVQAPAEKGFSSFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGAS 204          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT1_ARATH (ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.614e-84
Identity = 153/204 (75.00%), Postives = 172/204 (84.31%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQLLHSSLSQNIQ-DYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M+DQVQHP++ QK AGQ + SS+S+++Q  Y+RP+MYQR   YGNYSNAAFQ+P  S       M+ +TAS + VQ P EKGF  FA+DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK+GRLSEPYKGIGDCF RT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL    AAGAS
Sbjct:    1 MVDQVQHPTIAQKAAGQFMRSSVSKDVQVGYQRPSMYQRHATYGNYSNAAFQFPPTSR------MLATTASPVFVQTPGEKGFTNFALDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGAS 198          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 8.009e-84
Identity = 151/207 (72.95%), Postives = 176/207 (85.02%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQLLHSSLSQNIQDY----ERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M++Q QHP+++QKV+GQLL SS+SQ+I+ Y    +RP  YQ+  AYGNYSNAAFQYP+V+A     S + +T S + VQAP EKGF  FAIDF+MGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRL+EPYKGI DCF RT++DEGI +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD+DGYW+WFAGNL    AAGAS
Sbjct:    1 MVEQTQHPTILQKVSGQLLSSSVSQDIRGYASASKRPATYQKHAAYGNYSNAAFQYPLVAA-----SQIATTTSPVFVQAPGEKGFTNFAIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLTEPYKGIRDCFGRTIRDEGIGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGAS 202          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT2_SOLTU (ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.850e-78
Identity = 150/203 (73.89%), Postives = 163/203 (80.30%), Query Frame = 2
Query:  137 QHPSVMQKVAGQL-LHSSLSQNIQ----DYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            QHP+V QKVA Q+ L SSLSQ++       +RP + QRR  YGNYSNA  Q      AT DLS++ + AS + VQAP EKG A FA DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK+GRLSEPYKGIGDCF RT+KDEG  ALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL     AGAS
Sbjct:    4 QHPTVYQKVASQMHLSSSLSQDVHARYGGIQRPALSQRRFPYGNYSNAGLQ---TCQATQDLSLIAANASPVFVQAPQEKGLAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFSRTIKDEGFAALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGGAGAS 203          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT1_SOLTU (ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.850e-78
Identity = 151/207 (72.95%), Postives = 166/207 (80.19%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M D  QHP+V QK A QL L SSLSQ++       +P +YQR  AYGNYSNA  Q      AT DLS++ S AS + VQAP EKGFA FA DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRLSEPYKGIG+CF RT+K+EG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL    AAGAS
Sbjct:    1 MADMNQHPTVFQKAANQLDLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAGLQR---GQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGECFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGAS 204          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT1_MAIZE (ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.372e-67
Identity = 135/207 (65.22%), Postives = 153/207 (73.91%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M DQ   P+V+ K+ GQ  L S +S+ ++        + Y+RR A  NY   +   P +S +      VP   + +C  APAEKG   F IDF+MGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGI DCFKRT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL    AAGAS
Sbjct:    1 MADQANQPTVLHKLGGQFHLRSIISEGVRARNICPSVSSYERRFATRNYMTQSLWGPSMSVSGG--INVPVMQTPLCANAPAEKGGKNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIVDCFKRTIKDEGFSSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGAS 205          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.162e-66
Identity = 136/207 (65.70%), Postives = 153/207 (73.91%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYER-PTM--YQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M DQ   P+V+ K+ GQ  L SS S+ ++     P+   Y+RR A  NY   +   P +S +      VP   + +   APAEKG   F IDF+MGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGI DCFKRT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW+WFAGNL    AAGAS
Sbjct:    1 MADQANQPTVLHKLGGQFHLSSSFSEGVRARNICPSFSPYERRFATRNYMTQSLWGPSMSVSGG--INVPVMPTPLFANAPAEKGGKNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIADCFKRTIKDEGFSSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGAS 205          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT_ORYSJ (ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.049e-64
Identity = 132/212 (62.26%), Postives = 148/212 (69.81%), Query Frame = 2
Query:  122 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYS-----NAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            M +Q   P+V+QK  GQ  L SS S+ ++        + Y RR    +Y      N     P++S+            S I   APAEKG   F IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK+GRLSEPYKGIGDCF RT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKD+DGYW+WF GNL    AAGAS
Sbjct:    1 MAEQANQPTVLQKFGGQFHLGSSFSEGVRARNICPSVSSYDRRFTTRSYMTQGLVNGGINVPMMSS------------SPIFANAPAEKGGKNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFGGNLASGGAAGAS 200          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT2_WHEAT (ADP,ATP carrier protein 2, mitochondrial OS=Triticum aestivum GN=ANT-G2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.228e-59
Identity = 112/143 (78.32%), Postives = 123/143 (86.01%), Query Frame = 2
Query:  305 LSMVPSTASAICVQAPAEK-GFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            +S+   ++S +   AP EK G   FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK+GRLSEPYKGIGDCF RT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKR+FNFKKD+DGYW+WF GNL    AAGAS
Sbjct:    7 ISVPMMSSSPLFANAPPEKKGVKNFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRMFNFKKDKDGYWKWFGGNLASGGAAGAS 149          
BLAST of FC930573 vs. ExPASy Swiss-Prot
Match: ADT1_WHEAT (ADP,ATP carrier protein 1, mitochondrial OS=Triticum aestivum GN=ANT-G1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.165e-58
Identity = 108/127 (85.04%), Postives = 115/127 (90.55%), Query Frame = 2
Query:  350 PAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWEWFAGNLGIRSAAGAS 730
            P +KG   FAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK+GRLSEPYKGIGDCF RT+KDEG  +LWRGNTANVIRYFPTQALNFAFKDYFKR+FNFKKD+DGYW+WF GNL    AAGAS
Sbjct:   23 PEKKGVKNFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRMFNFKKDKDGYWKWFGGNLASGGAAGAS 149          
The following BLAST results are available for this feature:
BLAST of FC930573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ADT1_GOSHI4.685e-9283.01ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]
ADT1_ARATH1.614e-8475.00ADP,ATP carrier protein 1, mitochondrial OS=Arabid... [more]
ADT2_ARATH8.009e-8472.95ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
ADT2_SOLTU3.850e-7873.89ADP,ATP carrier protein, mitochondrial (Fragment) ... [more]
ADT1_SOLTU3.850e-7872.95ADP,ATP carrier protein, mitochondrial OS=Solanum ... [more]
ADT1_MAIZE1.372e-6765.22ADP,ATP carrier protein 1, mitochondrial OS=Zea ma... [more]
ADT2_MAIZE1.162e-6665.70ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
ADT_ORYSJ7.049e-6462.26ADP,ATP carrier protein, mitochondrial OS=Oryza sa... [more]
ADT2_WHEAT5.228e-5978.32ADP,ATP carrier protein 2, mitochondrial OS=Tritic... [more]
ADT1_WHEAT1.165e-5885.04ADP,ATP carrier protein 1, mitochondrial OS=Tritic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009A03EF PostHarvC1 Citrus clementina cDNA clone C34009A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930573 ID=FC930573; Name=FC930573; organism=Citrus clementina; type=EST; length=732bp
GACGCCGGCCTCCACCACAAAAAAGCAAAATATCTCTGCTTCTCTCGCTT
TTCGCACGCCATTCCTATCTAAGCAGAGCGGGAGGCGGGCACCAATCTGT
CATTTTTAAGGAAAAGTCACAATGATTGATCAGGTTCAACATCCTTCCGT
CATGCAGAAGGTAGCTGGACAGCTCCTTCATTCCAGCCTTTCCCAAAATA
TTCAGGATTATGAAAGGCCAACCATGTACCAAAGACGTGGTGCTTATGGG
AACTACTCCAATGCTGCATTCCAATACCCCATAGTCAGTGCAGCTACTAC
CGATCTATCTATGGTGCCGTCAACTGCATCTGCTATTTGCGTCCAAGCCC
CAGCTGAGAAAGGCTTTGCAGGCTTTGCTATCGATTTCCTTATGGGTGGA
GTTTCTGCTGCTGTGTCCAAAACAGCTGCTGCTCCCATTGAGCGTGTTAA
GCTTTTGATTCAAAACCAAGATGAGATGATCAAGAGTGGTAGGCTATCTG
AACCCTACAAGGGCATTGGTGATTGTTTTAAGCGTACAATGAAGGATGAG
GGTATTGTTGCTTTGTGGAGAGGAAATACTGCTAATGTTATCCGTTACTT
CCCCACTCAGGCCCTGAACTTTGCATTCAAGGATTACTTCAAGAGGCTCT
TCAACTTCAAGAAAGACAGGGATGGTTACTGGGAATGGTTTGCTGGTAAT
TTGGGGATCAGGAGTGCTGCTGGTGCTTCATC
back to top