FC930576

Overview
NameFC930576
Unique NameFC930576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15180 contig Ccv1_Contig15180:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930576 vs. ExPASy Swiss-Prot
Match: VP371_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40
Identity = 92/149 (61.74%), Postives = 111/149 (74.50%), Query Frame = 2
Query:  254 MFKFWGS-NEQQAQPRPQDVTSQS-WYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELRRETLXIARDNLDKELRMIELRNQSKIIRTTELA 694
            MF FWGS ++QQ Q RPQ+ +SQS WY             +PS+ S  S +  RP    Q  + VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DELRRETL +ARDNL+KE +++ELRNQ +IIRTTELA
Sbjct:    1 MFNFWGSKDQQQGQSRPQEASSQSPWY-------------SPSLVS--SPSSSRPQSSGQISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELA 134          
BLAST of FC930576 vs. ExPASy Swiss-Prot
Match: VP372_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 87/149 (58.39%), Postives = 108/149 (72.48%), Query Frame = 2
Query:  254 MFKFWGSNEQQ-AQPRPQ-DVTSQSWYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELRRETLXIARDNLDKELRMIELRNQSKIIRTTELA 694
            MF FWGS EQQ  Q RP  + ++  WY             +PS+ +  S +  RP    Q  SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+ELR+ETL +AR+NL+KE +++ELRNQ +IIRT+ELA
Sbjct:    1 MFNFWGSKEQQQGQSRPSPEASATPWY-------------SPSLVT--SPSSSRPQTSGQIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQCRIIRTSELA 134          
The following BLAST results are available for this feature:
BLAST of FC930576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VP371_ARATH3.855e-4061.74Vacuolar protein-sorting-associated protein 37 hom... [more]
VP372_ARATH5.210e-3758.39Vacuolar protein-sorting-associated protein 37 hom... [more]
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Properties
Property NameValue
Genbank descriptionC34009A06EF PostHarvC1 Citrus clementina cDNA clone C34009A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930576 ID=FC930576; Name=FC930576; organism=Citrus clementina; type=EST; length=698bp
AGTTCCTCCTCTACAGTGAATTCTCCGTCATCGAAACGTTTCTCAATTCA
TTAAATAATTTTTTTCTTTTTCTCTTCTTCCACGAGCACGCCACGCGGAC
GCGGACTCAAGTTTCGATTGATATTTCCTTGAAGTTGATCAATCAAAGAA
AACAATTGGCAAGAGATACAAGAATTCGCGATCCACTCGTTCTGTTATTG
CAATCTAGGGTTTATGTTCTTGGCCTGACCAAATAATCAGCCAATCCTGA
GCTATGTTCAAGTTCTGGGGTTCGAATGAGCAACAAGCTCAACCGCGTCC
GCAAGATGTTACTTCACAATCTTGGTACCCTCCATCTGTAGTCTCCCCAG
ATTCTTCCCGCCCTGCTACGCCTAGTATGAGCTCTTTTGGCAGCTTAAAT
TTACAAAGGCCAACAGAACAGTCACAACCCCTATCACATGTTTCACCAGC
TGAAGCTGCAGGCATTATTGCCCTCTTGAAGGACAAAAGTGTTGATGAGT
TACGGAAGCTCTTGGCGGATAAGGATGCATACCGCCAATTTTTACTCTCA
ATTGATCAAGTTAAAATTCAAAACAATATAAGGGATGAACTTCGCAGGGA
AACTTTGNCAATTGCCAGGGACAACTTGGACAAGGAACTGCGCATGATTG
AGCTTAGAAACCAAAGTAAAATTATTCGGACAACAGAATTGGCTGCTG
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