FC930580

Overview
NameFC930580
Unique NameFC930580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15256 contig Ccv1_Contig15256:5..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930580 vs. ExPASy Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.751e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  187 TMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVMGKLYFVR 318
            +MLQFYTDDAPGLKISPNVVL+MSIGFIAFVAVLHVMGKLYFV+
Sbjct:   39 SMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFVK 82
The following BLAST results are available for this feature:
BLAST of FC930580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SC61B_ARATH7.751e-1793.18Protein transport protein Sec61 subunit beta OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC34009A10EF PostHarvC1 Citrus clementina cDNA clone C34009A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930580 ID=FC930580; Name=FC930580; organism=Citrus clementina; type=EST; length=532bp
GACGAATCAAAATTTGCAATTGCTGCTTCTTCGACGATCTGAAATTTTTC
GAGTGGAGTCAAAATGGCTTTGACCGGACCTGCACCGCCCAGAGGAAGCG
CAGCAGCTACTGCAAATATGCGTAGGAGGAGGACGAGCAGTGCTGGGGCT
GGGGCTGGGGCTGGGGCCTCGGGAGGTGCAGCTGGTACCATGCTCCAGTT
TTACACAGATGATGCTCCAGGACTTAAGATCTCTCCGAATGTTGTGCTTG
TCATGAGCATTGGATTCATTGCCTTTGTTGCTGTTCTTCATGTCATGGGA
AAGCTTTACTTTGTCCGAAAAGAGTAGAGCAGCCTGAATTTGATAGCATA
CTAAATCTAAATTCGGTATGATGTGTCTGGATTTTGAAAACCAGATTTAG
CTTTCGTTCAGTTTACTGGTGGTTGAGGTTGCTTAATGTAGTTGTAACTC
TGGAGAGAATGACTCTTATTCAATGCCTTAAAGACTGCAAAATATCAATC
TTTTCTTCTAATTGAAAATGTTACTATTTGGA
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