FC930583

Overview
NameFC930583
Unique NameFC930583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5981 contig Ccv1_Contig5981:115..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930583 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.530e-51
Identity = 94/209 (44.98%), Postives = 140/209 (66.99%), Query Frame = 1 
Query:   19 QCEMELPLKSIAVTIVILTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKAIFTKINDFQKVNSI--PLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLCNLT 639
            + +M+   K+IA TI  L V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA ++P+  +++I  R+ P ++  +N YG+NSF W G  PR+++M P+ IK + T  + +QK   +  PL + L+ G+ S EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LT
Sbjct:    2 EMDMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLT 209

HSP 2 Score: 24.6386 bits (52), Expect = 3.530e-51
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  639 SDVISRTAFGSSY 677
            SDVIS+ AFGS+Y
Sbjct:  210 SDVISKVAFGSTY 222
The following BLAST results are available for this feature:
BLAST of FC930583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO3.530e-5144.98Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionC34009B01EF PostHarvC1 Citrus clementina cDNA clone C34009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930583 ID=FC930583; Name=FC930583; organism=Citrus clementina; type=EST; length=699bp
GTAACCCGCAAAATCTGTCAGTGTGAAATGGAGTTGCCTCTGAAATCCAT
AGCTGTTACCATTGTTATTCTAACGGTGCTAACATGGGCATGGAGAGTGC
TGAACTGGGTGTGGCTGAGGCCCAAGAAGCTGGAGAAATTCCTGAGACAG
CAAGGTTTAAAAGGCAATTCTTACAGGCTTCTGTTTGGTGACTTGAAAGA
AAATTCCATCGAGCTGAAGGAAGCCAAAGCCAGACCCCTCAGTTTGGATG
ACAATATTGCTATTCGTGTCAATCCATTCCTTCATAAACTGGTAAATGAT
TATGGTAAGAATTCTTTCATGTGGTTTGGTCCGACACCAAGGGTGAATAT
TATGAATCCTGATCAAATAAAAGCGATATTTACCAAGATCAATGATTTTC
AAAAAGTCAATTCAATCCCACTTGCCAGGCTGCTGATAGTTGGATTGGCT
AGCCTTGAGGGGGAGAAGTGGGCTAAACATAGAAAACTCATCAACCCAGC
CTTCCACCAAGAGAAGCTCAAGCTTATGTTGCCAGCATTCTACTTGAGTT
GTACCGAAATAATTACAAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCA
TCTGAGTTGGATGTATGGCCTTATCTTTGCAATTTAACAGTGATGTGATT
TCTCGAACGGCTTTTGGGAGTAGTTATGAAGAGGAAGAAGGATTTTTCA
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