FC930595

Overview
NameFC930595
Unique NameFC930595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK1_ARATH (Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.919e-56
Identity = 90/112 (80.36%), Postives = 102/112 (91.07%), Query Frame = 3
Query:    3 NSSSSLDVLNAAKHYKLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            N  +SL VLNAA H+KLHQRAAHVYSEA+RV+ FKDTV SNLSD++KL++LGDLMN+SH+SCSVLYECSCPELEELV VC++NGALGARLTGAGWGGCAVALVKE  V QFI
Sbjct:  345 NDPTSLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPELEELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFI 456          

HSP 2 Score: 51.2174 bits (121), Expect = 2.919e-56
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  436 QEQFYQSRINQGVINKNDLGLYVFASKPSSGAAIF 540
            +E++Y+ R+ +GV+ K D+ LY+FASKPSSGAAIF
Sbjct:  460 KEKYYKKRVEKGVVKKEDMELYLFASKPSSGAAIF 494          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK_DICDI (Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 3
Query:   36 AKHYKLHQRAAHVYSEAKRVYAFKDTV--YSNLSDKDK------------LRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            ++H++L++RA HV++E +RVY F +     SN ++ +             ++ LG LMN+SH SCS L+ECSC EL+ L  +CR+NGALG+RLTGAGWGGC ++LV  S V  F+
Sbjct:  345 SEHFELYKRARHVFTETQRVYKFSEICKQQSNFNNNNNNNNNNSSNNTNIIQELGKLMNESHESCSKLFECSCSELDSLTKICRENGALGSRLTGAGWGGCVISLVPNSKVDSFL 459          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK2_PONAB (N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   45 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            +KL+QRA HVYSEA RV  FK       + ++ ++ LG+LMN SH SC  +YECSCPEL++LV +CR  GA G+RLTGAGWGGC V++V    +P F+
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSIVPADKLPSFL 421          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK2_MOUSE (N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   45 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            +KL+QRA HVYSEA RV  FK       +  + ++ LG+LMN SH SC  +YECSCPEL++LV +CR  GA G+RLTGAGWGGC V+LV   ++  F+
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKQVCED--APDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADMLSSFL 421          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK2_HUMAN (N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   45 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            +KL+QRA HVYSEA RV  FK       + ++ ++ LG+LMN SH SC  +YECSCPEL++LV +CR  GA G+RLTGAGWGGC V++V    +P F+
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFL 421          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GALK2_RAT (N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   45 YKLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQFI 338
            +KL+QRA HVYSEA RV  FK    +  +  + ++ LG+LMN SH SC  +YECSCPEL++LV +CR  GA G+RLTGAGWGGC V+LV    +  F+
Sbjct:  326 FKLYQRAKHVYSEAARVLQFKQVCEA--APDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADTLSSFL 421          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GAL1_YEAST (Galactokinase OS=Saccharomyces cerevisiae GN=GAL1 PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 3
Query:   48 KLHQRAAHVYSEAKRVYAFKD--TVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALV 311
            KL+QRA HVYSE+ RV       T  S  +D+D  ++ G LMN+S  SC  LYECSCPE++++ ++   NG+ G+RLTGAGWGGC V LV
Sbjct:  389 KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALSNGSYGSRLTGAGWGGCTVHLV 478          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GAL1_KLULA (Galactokinase OS=Kluyveromyces lactis GN=GAL1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 45/93 (48.39%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   48 KLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIV 326
            KL QRA HVYSEA RV   K        + +     G LMN+S  SC  LYECSCPE + +  +   NG+ G+RLTGAGWGGC V L     V
Sbjct:  372 KLFQRAKHVYSEALRV--LKALQLFQKGESNFFEEFGALMNESQESCDKLYECSCPETDSICEIALKNGSFGSRLTGAGWGGCTVHLCSTDTV 462          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GAL3_YEAST (Protein GAL3 OS=Saccharomyces cerevisiae GN=GAL3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   48 KLHQRAAHVYSEAKRVYAFKDTVYSNL--SDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALV 311
            KL+QRA HVYSE+ RV      + S    +D+D     G LMN+S  SC  LYECSC E  ++ ++   NG+ G+RLTGAGWGGC + LV
Sbjct:  381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLV 470          
BLAST of FC930595 vs. ExPASy Swiss-Prot
Match: GAL1_CANPA (Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:   48 KLHQRAAHVYSEAKRVYAFKDTVYSNLSDKDKLRRLGDLMNDSHHSCSVLYECSCPELEELVTVCRDNGALGARLTGAGWGGCAVALVKESIVPQ 332
            KL++RA HVY E+ RV      + + +     L+  G LMN+S H   +L E S P+L E+ ++   NGA G+R+TGAGWGG  V L     +P+
Sbjct:  363 KLYERALHVYRESLRVLKTLQLLSTVVDASQFLQTFGSLMNESQHDLDILNESSNPKLNEICSIALANGAYGSRVTGAGWGGSIVHLTTTENLPK 457          
The following BLAST results are available for this feature:
BLAST of FC930595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALK1_ARATH2.919e-5680.36Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2... [more]
GALK_DICDI1.365e-2446.09Galactokinase OS=Dictyostelium discoideum GN=galK ... [more]
GALK2_PONAB2.328e-2454.08N-acetylgalactosamine kinase OS=Pongo abelii GN=GA... [more]
GALK2_MOUSE2.328e-2454.08N-acetylgalactosamine kinase OS=Mus musculus GN=Ga... [more]
GALK2_HUMAN2.328e-2454.08N-acetylgalactosamine kinase OS=Homo sapiens GN=GA... [more]
GALK2_RAT3.040e-2454.08N-acetylgalactosamine kinase OS=Rattus norvegicus ... [more]
GAL1_YEAST1.012e-1952.22Galactokinase OS=Saccharomyces cerevisiae GN=GAL1 ... [more]
GAL1_KLULA3.599e-1748.39Galactokinase OS=Kluyveromyces lactis GN=GAL1 PE=2... [more]
GAL3_YEAST1.047e-1648.89Protein GAL3 OS=Saccharomyces cerevisiae GN=GAL3 P... [more]
GAL1_CANPA3.153e-1340.00Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC34009C02EF PostHarvC1 Citrus clementina cDNA clone C34009C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930595 ID=FC930595; Name=FC930595; organism=Citrus clementina; type=EST; length=709bp
CAAATAGTTCATCTTCTCTGGATGTACTGAATGCTGCAAAGCATTACAAG
TTACATCAGAGAGCAGCCCATGTGTACTCTGAAGCCAAGAGGGTGTATGC
TTTCAAGGACACTGTATACTCAAATTTAAGTGACAAAGACAAGCTGAGGA
GGCTGGGTGACCTTATGAATGACAGCCACCACAGCTGCAGTGTTTTATAT
GAGTGCAGTTGCCCAGAGTTGGAAGAACTGGTGACAGTTTGTCGGGATAA
TGGTGCTCTTGGGGCAAGGCTTACAGGGGCTGGATGGGGGGGTTGTGCGG
TTGCCTTGGTAAAAGAAAGCATAGTGCCTCAGTTTATCCTCAATTTGAAG
GTACTTGTAAAATTTTGACTGAATCTCTGCTTGCAAATTCTGAAAGTGAA
TGTTATAACACATATTGATTCTTGTGTATCTGTATCAGGAACAATTTTAT
CAGTCGAGAATCAACCAAGGTGTGATAAACAAGAACGATCTTGGCCTTTA
TGTTTTCGCCTCCAAGCCATCGAGTGGTGCTGCCATTTTCAAGTTTTAGT
CCATGTCCGATTAATCTTCAGCTTGAATAAAATACGGTCGTGTACTATCA
GAACCTCAATCCTTACCGTCTTGAATTTTAGAATCATCGAACGCAACTTG
ATCGCATATTTTTATTTAGCGCTCTCATAATTCGCCATCGTCAATCTGTC
TCTGCTTAT
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