FC930596

Overview
NameFC930596
Unique NameFC930596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15183 contig Ccv1_Contig15183:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930596 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 86/174 (49.43%), Postives = 105/174 (60.34%), Query Frame = 1 
Query:  181 MEALNPAGLIPLSVLCDRSSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKXXXXXXXXXXXXXXXXXAQALTYEEALQQXXXXXXXXXXXXXFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV 699
            MEAL  A   P+SVL ++ SEPRK  SL     PK    +    +Q++FL+ F                   A++LTYEEALQQ              I+ + +F T+NPL IAGGV  LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA  +FRQVGSP++
Sbjct:    1 MEALKTATFSPMSVLSEKRSEPRKPFSLPNLFPPK----SQRPISQESFLKRF--NGGLALLTSVLSSATAPAKSLTYEEALQQSMTTSSSFDSDG-LIEGISNFVTDNPLVIAGGVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNI 167
The following BLAST results are available for this feature:
BLAST of FC930596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH1.134e-3149.43Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34009C03EF PostHarvC1 Citrus clementina cDNA clone C34009C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930596 ID=FC930596; Name=FC930596; organism=Citrus clementina; type=EST; length=699bp
GGTAAGTACGTCGGCCAAATTGGACCAACTGAAGGCTGAAGCTAAAGATT
GTGATTCTCTGGCCTTTGCTTGCTCACCTCTCCATCACATCCTGAAAAGA
AAACAAATTCTACATAGCATGCTGGCTCAAGCATTTCCATCAATTCTTTG
AGAGGCCAAAAGATCATATAAAATTATGCCATGGAGGCCCTCAATCCAGC
GGGCTTGATACCTTTATCGGTTCTTTGTGACAGAAGCTCAGAACCCAGAA
AAATTCAATCACTTTCCACGGCTTCTTTACCCAAACTCGCAACTTCTGCT
TCTAATAAAACCACCCAACAAAATTTTCTAGAGTGTTTTGCAAAGAGTGT
GCATGGCGGTTTAGTGCTGTTATCTTCAGTTCTTGGTACTGGTTTAGCTC
AAGCTTTAACATATGAAGAAGCGCTGCAGCAGTCAGCAGGCTCTTCAGCA
TCTGATGTTGATGCAAGTGGATTTATTGACAGCGTAATCAGTTTTGGAAC
AGAGAATCCTTTAGCTATAGCTGGTGGTGTCACCATTTTGGCTGTTCCAT
TAGTTTTGTCTCAGGTTCTGAACAAGCCTAAGTCATGGGGTGTTGAGTCT
GCAAGGAATGCTTATGCAAAGTTGGGTGACGATGCGAGTGCCCAGTTGCT
TGATATAAGAGCTCCCGTGGAATTTCGGCAAGTAGGTAGTCCTGATGTC
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