FC930603

Overview
NameFC930603
Unique NameFC930603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930603_ssr133 microsatellite FC930603_ssr133:133..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32
Identity = 66/144 (45.83%), Postives = 99/144 (68.75%), Query Frame = 3
Query:  267 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689
            D    R++YVGN+   VTE L+ ++FS  GP + CK+I +  S+  Y F+ +++ R AA A+ ++NGR + G+ +KVNWA   S Q++DTS HF++FVGDLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N
Sbjct:    4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  267 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-------------------YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689
            D    R++YVGN+   VTE L+ ++FS  GP + CK+I +   S                   Y F+ +++ R AA A+ ++NGR + G+ +KVNWA   S Q++DTS HF++FVGDLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N
Sbjct:    4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  282 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689
            +++YVGN+   VTE L+ ++FS  GP + CK+I     +  Y F+ + + R AA A+ ++NGR + G+ +KVNWA   S Q++DTS            HF++FVGDLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  282 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689
            +++YVGN+   VTE L+ ++FS  GP + CK+I     +  Y F+ + + R AA A+ ++NGR + G+ +KVNWA   S Q++DTS            HF++FVGDLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  237 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            +P+  +  G + S  R +YVGN+   +TE +L++ F   GP+   K++  + +K+ +Y F+ Y     A +A+ +LNG+ +    +K+NWA+ S Q+  +   FN+FVGDL+  V D TL   F  +PS     VMWD +TG SRG+GFVSF
Sbjct:   61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 210          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+G+L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+G+L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+G+L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNSRMPK 704
            ++++G +   VTE  +Q+V+++ G     KLIR       + Y F+ +     A+ A +S+N + + G     K+NWA   G RE +   +  ++IFVGDLSP V +  +++ F S Y SC  A++M D +T  SRG+GFV F +    K
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSF 683
            ++YVG +  +V+E +L E+    GPV    +    +  +   +GF+ +     A  AI  LN   L+G+PIKVN A A  +  D     NIFVG+L PEV +  L+  FS +       ++M D  +G S+GF F++F
Sbjct:   14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149          
The following BLAST results are available for this feature:
BLAST of FC930603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TIAR_HUMAN4.074e-3245.83Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIAR_MOUSE3.813e-3040.99Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_MOUSE4.661e-2842.67Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN4.661e-2842.67Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PUB1_YEAST6.965e-2438.16Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
SF3B4_RAT2.399e-1634.78Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE2.399e-1634.78Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN2.399e-1634.78Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
YG41_SCHPO3.465e-1534.00Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
SF3B4_CAEEL1.720e-1434.06Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionC34009C10EF PostHarvC1 Citrus clementina cDNA clone C34009C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930603 ID=FC930603; Name=FC930603; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTCTTTTCCTCATTTTCTCGA
GAAACCCTAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGG
ATTCTGAAGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGC
AACAACAAGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTAT
CATCCCGGCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAA
TCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAA
ACATACATACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGT
ACTGGTCCAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATA
CGGATTTATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTT
CTCTTAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCA
TATGCCAGTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGT
TGGTGATCTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTT
CTGTTTATCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACT
GGGCGTTCTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACAGCAGGATGCC
CAAGTGCGATAACGATCTACTGG
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