FC930603
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32 Identity = 66/144 (45.83%), Postives = 99/144 (68.75%), Query Frame = 3 Query: 267 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689 D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30 Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 267 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-------------------YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689 D R++YVGN+ VTE L+ ++FS GP + CK+I + S Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28 Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 282 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28 Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 282 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24 Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 3 Query: 237 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683 +P+ + G + S R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F+ Y A +A+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS VMWD +TG SRG+GFVSF Sbjct: 61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 210
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3 Query: 285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3 Query: 285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 3 Query: 285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 683 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNSRMPK 704 ++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A +S+N + + G K+NWA G RE + + ++IFVGDLSP V + +++ F S Y SC A++M D +T SRG+GFV F + K Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 3 Query: 285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSF 683 ++YVG + +V+E +L E+ GPV + + + +GF+ + A AI LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + ++M D +G S+GF F++F Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149 The following BLAST results are available for this feature:
BLAST of FC930603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930603 ID=FC930603; Name=FC930603; organism=Citrus clementina; type=EST; length=723bpback to top |