FC930605

Overview
NameFC930605
Unique NameFC930605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:368..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930605 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 67/184 (36.41%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  154 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHP 690
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNP 217          
BLAST of FC930605 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 65/186 (34.95%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  154 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHP 690
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG+   S + V G I ++P
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNP 219          
BLAST of FC930605 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 62/180 (34.44%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  154 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGD 642
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD 213          
BLAST of FC930605 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 67/200 (33.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  112 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHP 690
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +HP
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHP 219          
BLAST of FC930605 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  151 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVA 627
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVA 198          
The following BLAST results are available for this feature:
BLAST of FC930605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH3.564e-2236.41Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH4.357e-2034.95Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.162e-1934.44Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH2.824e-1933.50Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
AAAD_RABIT4.828e-1131.68Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionC34009C12EF PostHarvC1 Citrus clementina cDNA clone C34009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930605 ID=FC930605; Name=FC930605; organism=Citrus clementina; type=EST; length=691bp
GGCAAATCATCCAAAAATAATTAAACACACCCAACACTCAACTAGGTAGC
TATGGTGAACGATGGAAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAA
GAGTCTACAGCGACGGTTCAGTTGATCGAACATGGACCGGACCACCGGAG
GTCAAGTTCTTGTCCGAACCGGTGCCACCCCACAGTGACTTTATTGACAG
TGTCGCCACCCACGACGTAACCATCAACAAAGAATCCGGCCTCCGTGTCC
GAATTTATTCACCGGAGGAGATCAAGAAACTTAATGGTGATGATTGCAAG
AACAAGAAGAAGCTACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTG
CGTTAGCCAAGCTGATTGGTACATGTACTATCACGTTTACACGAAGCTTG
CAAAATCTGTCCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCG
GAGCACCGCCTCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTG
GCTCCGGTCACTATCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGC
TGACTGAACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCC
GGAGGGAACGTAGTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGACTT
GAGCCCGTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGG
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