FC930608

Overview
NameFC930608
Unique NameFC930608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig597 contig Ccv1_Contig597:351..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930608 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.175e-78
Identity = 155/242 (64.05%), Postives = 174/242 (71.90%), Query Frame = 1
Query:   46 KMLGYETVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNL 756
            K  GY +V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG SALVFCGYIVYDTDNLIKRFTYD+YILASV LYLDILNL
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNL 243          
BLAST of FC930608 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.472e-24
Identity = 63/199 (31.66%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  160 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNL 756
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   DF+  G               +++FF    T   V   + AL+FCG+I+YDT +L+ R + ++Y++A+++LY+DI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINL 224          
BLAST of FC930608 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.140e-22
Identity = 64/199 (32.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  160 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNL 756
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   DFS  G               ++ FF        V     AL+FCG+I+YDT +L+ + + ++Y+LA+++LYLDI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINL 224          
BLAST of FC930608 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 61/199 (30.65%), Postives = 93/199 (46.73%), Query Frame = 1
Query:  160 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNL 756
            +R  F+RKVY ILTAQ+ +T+L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P        + G   LVFCGYI++DT N++ R++ +++I++S+ LYLD +NL
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINL 249          
BLAST of FC930608 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.956e-15
Identity = 60/215 (27.91%), Postives = 94/215 (43.72%), Query Frame = 1
Query:  115 DGERLYPG-LSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNL 756
            D + + PG +      +R  F+RKV GI+  Q++ T  + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF +      V     A +FC  +V D D ++ RF+ +DYI A V+LY+DILNL
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNL 263          
The following BLAST results are available for this feature:
BLAST of FC930608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH9.175e-7864.05BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE4.472e-2431.66Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN7.140e-2232.16Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO3.317e-1930.65Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL4.956e-1527.91Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionC34009D03EF PostHarvC1 Citrus clementina cDNA clone C34009D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930608 ID=FC930608; Name=FC930608; organism=Citrus clementina; type=EST; length=758bp
GAATAAAAAAAAAATCACGAAAATTCAAAAATCAAAATCGCTTGAAAGAT
GTTGGGCTACGAGACGGTGAGGAGCAAAGATGACGGCAAATTCGAGGTAG
ATCTGGAAGGCGGAGATGGGGAGAGGCTTTACCCCGGTCTCAGCTACGGC
GAGAACCAGCTCCGATGGGGTTTCATTCGCAAGGTGTACGGCATCTTGAC
GGCCCAGATCGTTTTGACCACCTTGGTCTCCTCAATCACCGTTCTTTACA
ATCCCATCAACGATCTTCTCAGGGGCAATTCTGGCCTTCTCCTCTTCCTC
TCCATCCTCCCCTTCATCCTGTTATGGCCACTGCATGTGTATCATCAGAA
GCACCCTGTGAACTTGATTGTCCTTGGTCTCTTCACTGTATCTCTGAGTC
TTCCTGTTGCTGTAAGCTGTGCTAATACCGATGGTAGGATTGTGCTTGAA
GCATTAATTCTGACCTCGGCTGTGGTTTGTTCTTTAACTGGGTACACTTT
CTGGGCCTCTAAGAAGGGCAAAGACTTCAGCTTTCTTGGACCAATTCTAT
TCACCAGCCTCATAATCCTCATTCTGACTAGCTTTATGCAGATGTTCTTT
CCTCTGGGATCTACATCCACTGCTGTTTATGGTGGAATTAGTGCACTGGT
CTTCTGTGGATACATCGTTTACGACACCGACAACTTGATCAAGCGCTTCA
CATATGATGATTATATCTTGGCCTCTGTCACTCTCTATCTGGATATTCTG
AACCTTTT
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