FC930610

Overview
NameFC930610
Unique NameFC930610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33
Identity = 77/181 (42.54%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  150 FNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692
            F  +  H   G + L++++      ++R++++ WILKV ++  F+P TAYL+VNY+DRFL +  +    GW   LL+VACL++AAKMEE  VP+L D Q+     ++LF+ KT+ RMELLV+S L WRL +VTPFDF+ +F  KI   +P     G   SHA + I+S      FL   PS
Sbjct:   55 FIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQV--AGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKI---DPSGTFLGFFISHATEIILSNIKEASFLEYWPS 230          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:  231 RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFN 596
            R EAI WI +VY++  F   TAYL+VNYLDRFL  + +  G+ W   LLSVACL++AAKMEET VP  LDLQ+ EP  RFLF+ +T+HRMELLV+++L WR+  VTPF ++ YF+ K++  N
Sbjct:  110 RSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEP--RFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGN 229          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 81/192 (42.19%), Postives = 118/192 (61.46%), Query Frame = 3
Query:  120 IDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTS-RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692
            ID +EF+  +   E+DHQ Q   L  +  +L  L  S R++AI WI KV+S+  F P + YL+VNYLDRFL S ++   + W   LLSV+CL++A KMEET VP  +DLQ+ +  + ++F+ + + RMEL+VM +LKWRL  VTPF F+ YF+ K   FN  +    ++ S  +D  + T     FL+  PS
Sbjct:   59 IDSDEFVALLVEKEMDHQPQRGYL--EKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFD--AEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDK---FNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 88/225 (39.11%), Postives = 123/225 (54.67%), Query Frame = 3
Query:   30 NLLCDESTDDIVSMDADIC----SDYHESFDHSLIDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692
            +LLC ES  D   M  D      S     F  S  + EE I+ +   E  H      +        +L   R++A+ WI K     QF P    L++NYLDRFL  H +  GKGW   LL+VACL++AAK+EET VP L+DLQ+ +P  +F+F+ K+V RMELLV++ LKWRL  +TP  ++ YF+ K+S     ++   ++ S +   I ST   IDFL   PS
Sbjct:    9 SLLCTESNVDDEGMIVDETPIEISIPQMGFSQS--ESEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDP--QFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMS--KCDQEPSNTLISRSLQVIASTTKGIDFLEFRPS 227          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.195e-31
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 3
Query:  120 IDDEEFIVNIFNSEVDH--QKQGSELLAKYRKLPEL-VTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNP 599
            +  EE +  +  +E DH  ++  +E L       +L +  R +AI WI KV+S+  F P TA L+VNYLDRFL  + +  GK W   LL+VACL++AAKMEET VP  LDLQ+ E   R++F+ KT+ RMELLV+S+LKWR+  VTPF +V YF+ +++  +P
Sbjct:   63 VPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGE--ERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDP 223          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 63/118 (53.39%), Postives = 89/118 (75.42%), Query Frame = 3
Query:  228 SRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISK 581
            +R E++ WILKV  ++ F P TAYL+VNY+DRFL    +  G+GW   LL+VACL++AAKMEET VP+LLDLQ+    SR++F+P+T+ RME L++++L WRL +VTPF F+ +F  K
Sbjct:   81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQV--ECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFACK 196          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 69/154 (44.81%), Postives = 103/154 (66.88%), Query Frame = 3
Query:  231 RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692
            R +A+ WILKV +H  F      LS+NYLDRFL S+ +   K W   LL+V+CL++A+KMEET VP+++DLQ+ +P  +F+F+ KT+ RMELLV+++L WRL  +TPF F+ YF+ KIS    +     ++   ++ FI++T   I+FL   PS
Sbjct:   97 RNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDP--KFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKISGHVSE-----NLIYRSSRFILNTTKAIEFLDFRPS 243          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 80/208 (38.46%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   54 DDIVSMDADICSDYHESFDHSLIDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFL 677
            DD  S   D  S +   F    ++ EE +  +   E  H  +  + L + R        R +A+ WI K     QF P    L++NYLDRFL  H +  GK W   LL+VACL++AAK+EET+VP L+ LQ+  P   F+F+ K+V RMELLV++ L+WRL  VTP  +V YF+SKI+ ++  ++    + + +   I ST   IDFL
Sbjct:   14 DDEKSNSVDTRSIFQMGFP---LESEEIVREMIEKERQHSPR-DDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAP--MFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYD--QEPHSRLVTRSLQVIASTTKGIDFL 213          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = 3
Query:  180 GSELLAKYRKLPELVTSR---QEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKI 584
            G+EL+      P     R    E++ WILKV S   F+P TAYL+V+Y+DRF+ S S+ P  GW   LL VACL++AAKMEE+S P LLDLQ+    +RF+F+P+T+ RMEL+V+  L WRL +VTPF FV +F  K+
Sbjct:  105 GAELVMPACSPPRTAVHRPGWSESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSL-PDHGWASQLLCVACLSLAAKMEESSAPPLLDLQI--EGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKV 239          
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.550e-29
Identity = 86/242 (35.54%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   30 NLLCDESTDDIVSMDADICSDYHE-------------SFDHSLIDD----EEFIVNIFNSEVDHQKQGS--ELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLS--HSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692
            +LLC+E ++ +   D D   +                S  H L D     EE + +    EV+   + +  E L K       ++ R  AI WI KV ++  F P  AYL+VNYLDRFL S   S+     W   LL VACL++AAKMEET+ P  LDLQ+  P   ++F  +T+HRME++V+++LKWR+  VTPF ++ +F+ KI   N        + S   + I+ST     FL   PS
Sbjct:   18 SLLCEEDSESVFGSDDDGVEETATMAPELGKMMSLGFSASHHLGDGGGGGEELVGSFMEKEVEQMVETARGEYLTKLSNGGIELSCRIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPE--YVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI---NEGNRITSELISRCTEIILSTMKATVFLRFRPS 254          
The following BLAST results are available for this feature:
BLAST of FC930610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CCD11_ARATH1.276e-3342.54Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD42_ORYSJ4.851e-3355.74Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD22_ORYSJ1.843e-3242.19Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ARATH2.407e-3239.11Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=... [more]
CCD41_ORYSJ1.195e-3146.01Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD21_ORYSJ1.011e-3053.39Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD21_ARATH1.321e-3044.81Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD42_ARATH1.907e-2938.46Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=... [more]
CCD11_ORYSJ1.907e-2950.00Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD23_ORYSJ5.550e-2935.54Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC34009D05EF PostHarvC1 Citrus clementina cDNA clone C34009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930610 ID=FC930610; Name=FC930610; organism=Citrus clementina; type=EST; length=726bp
GACCCTAAATGTCTGTGTCTCCTACTTGTAACTTGCTCTGTGATGAATCA
ACCGATGACATTGTTTCTATGGATGCTGACATCTGCAGTGATTATCATGA
ATCTTTTGATCATTCCCTTATTGATGATGAGGAATTCATTGTAAACATTT
TCAACTCAGAGGTGGATCATCAGAAGCAAGGATCAGAATTACTGGCAAAA
TATCGTAAGCTTCCAGAGCTTGTCACATCTCGACAAGAGGCAATCAAATG
GATTCTAAAGGTGTATTCTCACAGCCAATTTCGGCCTGAAACGGCTTATC
TTTCTGTGAACTACTTGGATCGTTTCCTGTTGTCCCATAGTATGAAGCCA
GGGAAAGGATGGCAATGGCACTTGTTATCGGTTGCATGCCTGGCCGTAGC
AGCTAAAATGGAGGAAACAAGCGTCCCTAATCTCTTAGACCTTCAATTAA
TAGAACCCAGTAGTAGATTTTTGTTCAAGCCCAAAACAGTTCACCGCATG
GAGCTTCTGGTAATGTCCAGTCTCAAGTGGCGATTGTGCACCGTAACCCC
CTTCGATTTTGTACATTATTTCATCTCTAAAATCTCATGCTTCAATCCCC
AACGTGATGGGTTTGGCTCCGTTTTTTCACACGCAGCCGACTTCATTATT
AGCACAAGGACAGTGATCGATTTCTTGGCTTGCCCTCCATCACNATAGCA
GCAGCTGTGGTGCTTTGGGCTACTGA
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