FC930610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33 Identity = 77/181 (42.54%), Postives = 112/181 (61.88%), Query Frame = 3 Query: 150 FNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692 F + H G + L++++ ++R++++ WILKV ++ F+P TAYL+VNY+DRFL + + GW LL+VACL++AAKMEE VP+L D Q+ ++LF+ KT+ RMELLV+S L WRL +VTPFDF+ +F KI +P G SHA + I+S FL PS Sbjct: 55 FIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQV--AGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKI---DPSGTFLGFFISHATEIILSNIKEASFLEYWPS 230
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33 Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3 Query: 231 RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFN 596 R EAI WI +VY++ F TAYL+VNYLDRFL + + G+ W LLSVACL++AAKMEET VP LDLQ+ EP RFLF+ +T+HRMELLV+++L WR+ VTPF ++ YF+ K++ N Sbjct: 110 RSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEP--RFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGN 229
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32 Identity = 81/192 (42.19%), Postives = 118/192 (61.46%), Query Frame = 3 Query: 120 IDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTS-RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692 ID +EF+ + E+DHQ Q L + +L L S R++AI WI KV+S+ F P + YL+VNYLDRFL S ++ + W LLSV+CL++A KMEET VP +DLQ+ + + ++F+ + + RMEL+VM +LKWRL VTPF F+ YF+ K FN + ++ S +D + T FL+ PS Sbjct: 59 IDSDEFVALLVEKEMDHQPQRGYL--EKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFD--AEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDK---FNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32 Identity = 88/225 (39.11%), Postives = 123/225 (54.67%), Query Frame = 3 Query: 30 NLLCDESTDDIVSMDADIC----SDYHESFDHSLIDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692 +LLC ES D M D S F S + EE I+ + E H + +L R++A+ WI K QF P L++NYLDRFL H + GKGW LL+VACL++AAK+EET VP L+DLQ+ +P +F+F+ K+V RMELLV++ LKWRL +TP ++ YF+ K+S ++ ++ S + I ST IDFL PS Sbjct: 9 SLLCTESNVDDEGMIVDETPIEISIPQMGFSQS--ESEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDP--QFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMS--KCDQEPSNTLISRSLQVIASTTKGIDFLEFRPS 227
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.195e-31 Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 3 Query: 120 IDDEEFIVNIFNSEVDH--QKQGSELLAKYRKLPEL-VTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNP 599 + EE + + +E DH ++ +E L +L + R +AI WI KV+S+ F P TA L+VNYLDRFL + + GK W LL+VACL++AAKMEET VP LDLQ+ E R++F+ KT+ RMELLV+S+LKWR+ VTPF +V YF+ +++ +P Sbjct: 63 VPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGE--ERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDP 223
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 63/118 (53.39%), Postives = 89/118 (75.42%), Query Frame = 3 Query: 228 SRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISK 581 +R E++ WILKV ++ F P TAYL+VNY+DRFL + G+GW LL+VACL++AAKMEET VP+LLDLQ+ SR++F+P+T+ RME L++++L WRL +VTPF F+ +F K Sbjct: 81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQV--ECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFACK 196
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30 Identity = 69/154 (44.81%), Postives = 103/154 (66.88%), Query Frame = 3 Query: 231 RQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692 R +A+ WILKV +H F LS+NYLDRFL S+ + K W LL+V+CL++A+KMEET VP+++DLQ+ +P +F+F+ KT+ RMELLV+++L WRL +TPF F+ YF+ KIS + ++ ++ FI++T I+FL PS Sbjct: 97 RNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDP--KFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKISGHVSE-----NLIYRSSRFILNTTKAIEFLDFRPS 243
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29 Identity = 80/208 (38.46%), Postives = 116/208 (55.77%), Query Frame = 3 Query: 54 DDIVSMDADICSDYHESFDHSLIDDEEFIVNIFNSEVDHQKQGSELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFL 677 DD S D S + F ++ EE + + E H + + L + R R +A+ WI K QF P L++NYLDRFL H + GK W LL+VACL++AAK+EET+VP L+ LQ+ P F+F+ K+V RMELLV++ L+WRL VTP +V YF+SKI+ ++ ++ + + + I ST IDFL Sbjct: 14 DDEKSNSVDTRSIFQMGFP---LESEEIVREMIEKERQHSPR-DDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAP--MFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYD--QEPHSRLVTRSLQVIASTTKGIDFL 213
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29 Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 180 GSELLAKYRKLPELVTSR---QEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLSHSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKI 584 G+EL+ P R E++ WILKV S F+P TAYL+V+Y+DRF+ S S+ P GW LL VACL++AAKMEE+S P LLDLQ+ +RF+F+P+T+ RMEL+V+ L WRL +VTPF FV +F K+ Sbjct: 105 GAELVMPACSPPRTAVHRPGWSESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSL-PDHGWASQLLCVACLSLAAKMEESSAPPLLDLQI--EGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKV 239
BLAST of FC930610 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.550e-29 Identity = 86/242 (35.54%), Postives = 124/242 (51.24%), Query Frame = 3 Query: 30 NLLCDESTDDIVSMDADICSDYHE-------------SFDHSLIDD----EEFIVNIFNSEVDHQKQGS--ELLAKYRKLPELVTSRQEAIKWILKVYSHSQFRPETAYLSVNYLDRFLLS--HSMKPGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCFNPQRDGFGSVFSHAADFIISTRTVIDFLACPPS 692 +LLC+E ++ + D D + S H L D EE + + EV+ + + E L K ++ R AI WI KV ++ F P AYL+VNYLDRFL S S+ W LL VACL++AAKMEET+ P LDLQ+ P ++F +T+HRME++V+++LKWR+ VTPF ++ +F+ KI N + S + I+ST FL PS Sbjct: 18 SLLCEEDSESVFGSDDDGVEETATMAPELGKMMSLGFSASHHLGDGGGGGEELVGSFMEKEVEQMVETARGEYLTKLSNGGIELSCRIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPE--YVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI---NEGNRITSELISRCTEIILSTMKATVFLRFRPS 254 The following BLAST results are available for this feature:
BLAST of FC930610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930610 ID=FC930610; Name=FC930610; organism=Citrus clementina; type=EST; length=726bpback to top |