FC930611

Overview
NameFC930611
Unique NameFC930611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5628 contig Ccv1_Contig5628:230..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.454e-45
Identity = 91/195 (46.67%), Postives = 128/195 (65.64%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            +  PN +L   A  QS  D W+  NI  YYP+TKI +++VG EV   P N T  ++PAM+N++ +L K  LD  +K+SS  +L  L  S+PPSS SF S      LKPMLEFL +  S  M++ YP++AY  + +K+ L+YALF  +   VD   GL Y+N+FDAQLDA++ A++A+S+  VKV+VTE+GWPS G
Sbjct:   78 IGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDAQLDAIYFALTAMSFKTVKVMVTESGWPSKG 271          

HSP 2 Score: 23.0978 bits (48), Expect = 1.454e-45
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NL+R V+   GTP +P
Sbjct:  289 NLIRHVIGDPGTPAKP 304          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 83/196 (42.35%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPK-NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            +  PN +L+  +  QS  D W++ ++  YYP TKI  + VG E   DP  N + F+VPAM+NV  +L K  L   +KVS+ ++LG L  S+PPS+G+F S      L+PMLEFL +  S  M++ YP++AY  + + +SLDY LF  +   +D   GL Y N+FDAQ+DA++ A++A+++  +K++VTETGWP+ G
Sbjct:   77 IGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAY-FLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKG 271          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41
Identity = 78/197 (39.59%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            +  PN +++  +++Q+  D WV+ NI  YYP T+I  V VGNE+ + +  N +  LVPAM+ + NSL  + +  N+KV +P+A+ +L++S+PPS+G+F+ ++  P + P+L+FL  T+SY  +N +P+F +S N    SLD+ALF+ +    D   GL Y NL D  LD+V  AM+ + Y  +++ ++ETGWP+ GD
Sbjct:   93 ITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIH-NIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGD 288          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.545e-41
Identity = 81/197 (41.12%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            +   NE LSK   D S    W++ N++ + PAT I  + +GNE+ A +  + T  L+PAM+ V+++L+   L   + V++  +L  L++S+PPS+G F+ DL++ +L P+LEF RKT S  ++NAYPFFAY  N  ++ LD+ LF+ N G VD   G  Y N+  AQ+DAV++A++A  +  ++V ++ETGWPS GD
Sbjct:   80 IGLGNEYLSKMK-DPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLD-SLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPNQGIVDPATGFHYDNMLFAQIDAVYSALAAAGFKSLRVEISETGWPSKGD 274          

HSP 2 Score: 22.7126 bits (47), Expect = 7.545e-41
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  671 PLETKDPLNVYLFALF 718
            PL+  + L++Y+FALF
Sbjct:  305 PLKPNNDLSIYVFALF 320          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 9.811e-41
Identity = 81/199 (40.70%), Postives = 123/199 (61.81%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFR---DNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            ++ PN++L       S   NWV+ N+  +YPAT I AV+VG+EV     N  P LV A+KNV+ +L+   LD  +KVS+P++   + + +PPS   F   L    + P+L FL+ T+SYLMVN YP+  Y  +   I LDYALF+    N   VD+   ++Y+N FDA +DA + AM+ +++ ++ V+VTE+GWPS G+
Sbjct:   83 ISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSL-NAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATYFAMAFLNFTNIPVLVTESGWPSKGE 280          

HSP 2 Score: 25.7942 bits (55), Expect = 9.811e-41
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRP 683
            + NL+R VL+ +GTP RP
Sbjct:  295 NSNLIRHVLNKTGTPKRP 312          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.364e-40
Identity = 84/194 (43.30%), Postives = 124/194 (63.92%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            PN +L   AA+ S  +NWVQ N+  ++PA K   +AVGNEV       + T +L+PAM+N+ N++    L +N+KVSS + +  + NS+PPS GSF++D +   + P++ F+R+ +S L+VN YP+F+Y+ N   ISL YALF   P  V     L Y NLFDA  DAV+AA+S      +++VV+E+GWPS G
Sbjct:   87 PNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRND-VRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF-TAPNVVVQDGSLGYRNLFDAMSDAVYAALSRAGGGSIEIVVSESGWPSAG 278          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSA--ISYNDVKVVVTETGWPSVGD 588
            VA  NE L++ + D      WV+ N+  Y P TKI A+ VGNEV    ++  T  L PAM++++ +LV   L+  + V++  +L  L  SYPPS+ SF+ DL+  +L P+L+F  KT S +++NAYPFFAY  N   +SLD+ LF+ N G  D G+   Y N+  AQ+DAV+ A+ A  ISY  V +VV+ETGWPS GD
Sbjct:   78 VALGNEYLAQMS-DPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLG-SLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTDPGSNFHYDNMLFAQVDAVYHALDAVGISYKKVPIVVSETGWPSNGD 274          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-38
Identity = 80/198 (40.40%), Postives = 120/198 (60.61%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRD---NPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            ++ PN++L   +   +   NWV  N++ YYPAT I  +AVG+EV     N    LV A+K +  +LV   LD  +KVS+P +   + +S+PPS   F     +P + P+L+FL+ T S L++N YP+F Y  +   I LDYALF+    N   VD+   L YTN+FDA +DA + AMS +++ ++ +VVTE+GWPS G
Sbjct:   74 ISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTW-DPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNIPIVVTESGWPSKG 270          

HSP 2 Score: 24.2534 bits (51), Expect = 4.309e-38
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRPRTHLT 698
            + NL++ V++ +GTP  P T +T
Sbjct:  286 NSNLIQHVINKTGTPKHPGTAVT 308          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 5.631e-38
Identity = 77/197 (39.09%), Postives = 120/197 (60.91%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTT-PFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            +   NE L   + D +   +W+Q  +  +   T+I ++ VGNE+F    +     L+PAMK+VY +L    L+  V V+S  +L  L  SYPPSSGSFK + I+  L+P+L+F  +  S  ++NAYPFFAY  +  ++ L+Y LF+ N G VD    L Y N+  AQ+DA+++A+  + + D++V ++ETGWPS GD
Sbjct:   80 IGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPNQGMVDPNTNLHYDNMLFAQVDALYSAIKTLGHTDIEVRISETGWPSKGD 275          

HSP 2 Score: 22.7126 bits (47), Expect = 5.631e-38
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  662 KWDPLETKDPLNVYLFALF 718
            K  P +   P++VY+FALF
Sbjct:  301 KGTPAKQSVPIDVYVFALF 319          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.526e-38
Identity = 80/193 (41.45%), Postives = 121/193 (62.69%), Query Frame = 1
Query:   13 NEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVF-ADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            N ++   A+D +    W+ +N+  +YPA+KI  + VGNE+  ++  N    L+PAM+NV  +L    L   +KVS+  ++  L +S PPSSGSF +   +  LK +L+FL  T S   +N YPFFAY ++    +L + LF  N G+VDS  G+KYTN+FDAQ+DAV +A+ ++ +  V++VV ETGW S GD
Sbjct:   81 NGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGY-QTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVVAETGWASRGD 272          

HSP 2 Score: 21.9422 bits (45), Expect = 9.526e-38
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRP 683
            +GNL+  + S  GTPL P
Sbjct:  287 NGNLIAHLRSMVGTPLMP 304          
The following BLAST results are available for this feature:
BLAST of FC930611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E1312_ARATH1.454e-4546.67Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH1.481e-4242.35Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
EA6_ARATH2.792e-4139.59Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1311_ARATH7.545e-4141.12Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E132_ARATH9.811e-4140.70Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
GUB_NICPL2.364e-4043.30Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1310_ARATH3.774e-3844.22Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E133_ARATH4.309e-3840.40Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1314_ARATH5.631e-3839.09Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E137_ARATH9.526e-3841.45Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34009D07EF PostHarvC1 Citrus clementina cDNA clone C34009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930611 ID=FC930611; Name=FC930611; organism=Citrus clementina; type=EST; length=718bp
GTTGCGTTCCCCAATGAGGAACTCTCCAAGGCCGCAGCTGACCAGTCATT
TACTGACAACTGGGTCCAGGCCAATATCTCCAAGTACTACCCGGCAACGA
AGATCGAGGCCGTCGCAGTGGGCAACGAAGTCTTCGCAGACCCGAAGAAC
ACGACGCCGTTTCTCGTCCCCGCCATGAAGAACGTTTACAACTCCTTGGT
TAAGTACAAGCTTGATTCTAACGTTAAAGTCTCCTCTCCTATTGCTTTAG
GTGCGTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCAAATCGGAT
CTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGTAAGACGTC
GTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTCTGCTAACG
CGGATAAGATATCTTTAGACTACGCTTTGTTTAGGGATAATCCCGGTCAA
GTGGATTCAGGTAACGGGCTGAAGTATACTAACCTTTTTGACGCCCAACT
CGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGACGTGAAGG
TTGTGGTGACGGAGACTGGATGGCCGTCTGTGGGTGACGAGAATGAGGCG
GGTGCTGGTGCGGCCAATGCCGCGGCGTACACGGGAATCTAGTACGTAGA
GTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAGGACCCACTTAACGTT
TACCTCTTCGCTTTGTTC
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