FC930613

Overview
NameFC930613
Unique NameFC930613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12680 contig Ccv1_Contig12680:100..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930613 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.305e-52
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 2 
Query:  347 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAXRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVE 691
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAA R+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVE
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVE 115
The following BLAST results are available for this feature:
BLAST of FC930613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO3.305e-5290.43Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34009D09EF PostHarvC1 Citrus clementina cDNA clone C34009D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930613 ID=FC930613; Name=FC930613; organism=Citrus clementina; type=EST; length=693bp
GGAGAGACATGGGGAATTCGTTTTGCATGTTGTGTGGGTGCATCGACCAG
GCGAGTGTCGGCATCGTCGAGAGGTGGGGCCGGTTCGAGAAGTTGGCTGA
ACCGGGTCTACACTTTTTCAACCCTTGCGCCGGCCAGTGGCTCGCTGGTA
TCCTCTCCACCAGGATCAATTCCCTCGATGTCCGTATCGAGACCAAAACC
AAGGACAATGTCTTTGTGCAACTGCTGTGTTCAATTCAGTACCGGATTGT
CAGAGCAAATGCTGATGATGCATTTTATGAGTTGCAGAACCCCAAAGAGC
AGATCCAGGCTTATGTGTTGATGTGGTTCGTGCTCTTGTTCCAAGAATGA
CATTGGATGAGCTCTTTGAACAAAAAGGCGAAGTTGCTAAAGCTGTTTTG
GAGGAACTTGAGAAGGTGATGGGTGCATATGGATATAGCATTGAGCACAT
ATTGATGGTAGACATTATACCTGATCCTGCTGTGCGCAAGGCAATGAATG
AGATCAATGCGGCTCANAGGCTTCAGCTTGCTAGTGTATACAAAGGGGAA
GCTGAGAAGATTCTCCAAGTTAAAAGAGCAGAAGCTGAAGCTGAAGCCAA
GTACCTTGGTGGCGTAGGTGTGGCCAGGCAACGGCAGGCAATAACAGATG
GTTTGCGAGAGAACATTTTGAACTTCTCTCATAAGGTAGAAGG
back to top