FC930623

Overview
NameFC930623
Unique NameFC930623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_DANRE (Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.329e-28
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKMT  G  V PD RKG V I + +  LIHF W DRT   VEDD I+FP +  F++VNQ  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   22 LVEFRAGKMTLKGSTVTPDKRKGTVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_BOVIN (Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 74/180 (41.11%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEELDASVPLQVSEDMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGPAGLG 702
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P            +P  +         +S +G   +  LGGE    + S  G +    L ++   IGPAGLG
Sbjct:   23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP-----------PMPGALG--------ASGSGGHELSALGGE--GGLQSLLGNMSHSQLMQL---IGPAGLG 178          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_XENTR (Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.856e-27
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_HUMAN (Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADM1A_XENLA (Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-A PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  +N ++N P
Sbjct:   22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVEDDLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_RAT (Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:   23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_MOUSE (Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V Q  SGRVY+LKF    ++ F WMQEPK ++D + C  VN  +N P
Sbjct:   23 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADM1B_XENLA (Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   V+DD I+FP +  F++V+Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   22 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGSVDDDLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_CHICK (Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAGKM+  G  V PD RKGLV I + +  LIHF W DRT   VEDD I+FP +  F++V Q  +GRVY+LKF    ++ F WMQEPK ++D + C  VN ++N P
Sbjct:   23 LVEFRAGKMSLKGSTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 131          
BLAST of FC930623 vs. ExPASy Swiss-Prot
Match: ADRM1_DROME (Proteasomal ubiquitin receptor ADRM1 homolog OS=Drosophila melanogaster GN=CG13349 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  166 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHDLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 489
            L+EFRAG+M   GK V PD RKGLV + + +  L+HF W DRT   VEDD IVFP +  +++V+Q  +GRVY+LKF +  R+ F WMQEPK ++D + C  +N  +N P
Sbjct:   17 LVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNP 125          
The following BLAST results are available for this feature:
BLAST of FC930623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ADRM1_DANRE8.329e-2852.29Proteasomal ubiquitin receptor ADRM1 OS=Danio reri... [more]
ADRM1_BOVIN1.421e-2741.11Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus... [more]
ADRM1_XENTR1.856e-2751.38Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tr... [more]
ADRM1_HUMAN4.134e-2752.29Proteasomal ubiquitin receptor ADRM1 OS=Homo sapie... [more]
ADM1A_XENLA4.134e-2750.46Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus ... [more]
ADRM1_RAT7.051e-2752.29Proteasomal ubiquitin receptor ADRM1 OS=Rattus nor... [more]
ADRM1_MOUSE7.051e-2752.29Proteasomal ubiquitin receptor ADRM1 OS=Mus muscul... [more]
ADM1B_XENLA7.051e-2750.46Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus ... [more]
ADRM1_CHICK9.209e-2751.38Proteasomal ubiquitin receptor ADRM1 OS=Gallus gal... [more]
ADRM1_DROME1.018e-2549.54Proteasomal ubiquitin receptor ADRM1 homolog OS=Dr... [more]

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Properties
Property NameValue
Genbank descriptionC34009E07EF PostHarvC1 Citrus clementina cDNA clone C34009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930623 ID=FC930623; Name=FC930623; organism=Citrus clementina; type=EST; length=739bp
GGTCGTCTCCTTTCTAGGGTTTAATTAAAAATTGGGATAATTTTTTATCG
CACTTAATTGAATCCCCAATTTGCTCCTTGTGTTGATTGAAACAAACATT
CACAATAGAAAACTGGAGGAATGGGCTCATCGTCGACCGCAGCTTCTCCA
GCAATGCAGGAAATTTTGCTGGAGTTTCGTGCTGGTAAAATGACTTTTGA
CGGAAAGAAGGTTGTTCCTGATTCACGTAAAGGACTTGTTCGCATAGCAA
GGGGTGAACATGATTTAATCCATTTTCAGTGGCTTGATCGCACTCGCAAT
GTTGTTGAAGATGATCAGATTGTTTTTCCTCATGAGGCAGTGTTTGAGAA
GGTTAATCAAGCATCAGGAAGGGTCTATATTCTAAAGTTCAATACGGATG
ATAGGAAGTTCTTTCTCTGGATGCAGGAGCCTAAAGCTGAAGAAGATTCA
CAATTGTGTAACTCTGTCAACTATTTCATCAATCGACCTTTAGTGTTTGT
TAATGAAGAAGAGCTCGATGCTTCTGTTCCTCTACAAGTGTCTGAAGATA
TGGTTGAAGATGATGTCTCATCAAGAGCAGGAAATTTGGTGGTCCCAAAC
TTAGGTGGAGAAGCAATTAGTGACGTAACATCTTCATCAGGACCAGTTAA
ATTGGAAGATCTGCAAAGAATCTTTAGTAACATTGGACCTGCAGGCTTGG
GATTGGGAGACATCTTGAAAGCAGATTTGATAATGCCAT
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