FC930624

Overview
NameFC930624
Unique NameFC930624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15187 contig Ccv1_Contig15187:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930624 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 107/144 (74.31%), Postives = 117/144 (81.25%), Query Frame = 2
Query:  212 MDAGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTNKKQ 643
            M+AGG YNPRTVEEVF DFKGRRAGMIKALTT+V+EF+  CDPEKENLCLYG P+E W                  GINFARDGM EKDWLSLVAVHSDAWLL+VAF+FGARFGFDK+DRKRLFNM+N+LPTIFEVV GT KKQ
Sbjct:    1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQ 144          
The following BLAST results are available for this feature:
BLAST of FC930624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH3.415e-5874.31PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC34009E08EF PostHarvC1 Citrus clementina cDNA clone C34009E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930624 ID=FC930624; Name=FC930624; organism=Citrus clementina; type=EST; length=735bp
GAATCCGATTCAAATCCTCTAGACTCTCGCGTTCTCACACACTGAGTCCA
CTTCTTTTTGCTCAACAGTGGTCAAAATATTTTCACATCTTTCCCTCCTT
TACTCTTACTCTCTCTCACTCTCGCCAATTTCGAACTTCGATCTCTCTTC
TCTGTAAATCTGAAAACAAACGACGAAAAAGAAAAAGGGTGCGAGAGAAT
TTGATTCGGTGATGGACGCAGGTGGAGGCTACAATCCGCGTACGGTTGAA
GAAGTTTTTGGCGATTTCAAGGGCCGAAGAGCTGGCATGATTAAAGCCCT
TACTACTGAGGTTGAAGAGTTTTACCACCAGTGTGACCCTGAGAAGGAAA
ATCTTTGCCTCTACGGTTTTCCAAGCGAGCAGTGGGAGGTAAACTTACCT
GCTGAAGAAGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGTATCAACTT
TGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTGTCC
ACAGTGATGCTTGGTTACTCTCCGTGGCCTTTTACTTTGGTGCTAGGTTT
GGTTTTGATAAATCTGATAGGAAACGTCTTTTTAATATGATAAATGAACT
TCCAACAATATTTGAGGTTGTGACAGGGACAAACAAGAAACAGGCAAAAG
AAAAGTCTTCTGGTGTCAATCACAGTAGCAGCAAATCTAAATCAAACTCA
AAGCGAGGCTCTGAAAACTCAGCCAAGTTTTCAAA
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