FC930629

Overview
NameFC930629
Unique NameFC930629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15189 contig Ccv1_Contig15189:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930629 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 56/103 (54.37%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  393 LNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIKQAEGEAEAKYLSGLGIARQRQAIVDGL 701
            +NLD  FEQK E+AK+V EELEK M  YGY I   L+VDI PD  V+RAMN                     LQ+K+AE EAEAKYL G+G+ARQRQAI DGL
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGL 103
The following BLAST results are available for this feature:
BLAST of FC930629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO4.992e-2254.37Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
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Properties
Property NameValue
Genbank descriptionC34009F01EF PostHarvC1 Citrus clementina cDNA clone C34009F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930629 ID=FC930629; Name=FC930629; organism=Citrus clementina; type=EST; length=723bp
GGAGCCTCATTTGTTTCTTGTTTCAAAAGCAACTCTTTTGCAGGTTGCAG
TTTTGAAAGATGGGTCAAACGTTGGGCTGCATTCAGGTGGAGCAGTCAAA
AGTAGTCATCAGAGAACAATTTGGAAAGTTTGATCATGTGCTTGAACCTC
GGTGTCAATGCTTGCCTTGGTGCCTTGGCTACAAGGTAGCTGGTCGGCTT
TCACTCCGGGTGCAACAACTGGATGTTAAATGTGAAACAAAGACTAAGGA
TAATGTTTTTGTCAATGTGGTTGCTTCCGTTCAATATCGTGCCTTGGCTG
ATAAAGCTTATGATGCTTTCTATAAGCTCTCCAACACCAGGGGCCAAATC
CAAGCCTATGTCTTTGATGTTATCAGGGCAAGCGTACCAAAACTGAACTT
AGATGCCGCCTTTGAGCAGAAGAATGAAATTGCCAAAGCCGTTGAAGAGG
AGCTCGAAAAGGCCATGTCTCATTATGGGTATGAGATAGTGCAGACTCTT
ATTGTGGATATTGAGCCAGATGTTCATGTAAAGAGAGCAATGAATGAGAT
CAATGCAGCTGCAAGACTGAGGCTGGCAGCAAATGAGAAGGCTGAGGCAG
AGAAGATATTGCAAATCAAACAAGCTGAAGGGGAGGCTGAGGCAAAATAC
CTGTCCGGACTTGGGATAGCACGTCAGCGCCAGGCTATTGTTGATGGGTT
AGAGACAGTGTGCTTGCCTTCTC
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