FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig900 contig Ccv1_Contig900:2..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.915e-86
Identity = 151/194 (77.84%), Postives = 166/194 (85.57%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            M RKFFVGGNWKCNGTSEEVKKIV+ LNEAE                     K+LLR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYALS+GLKVIACVGETLEQRE+GST++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIK 194          

HSP 2 Score: 31.9574 bits (71), Expect = 2.915e-86
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            +NV A+VA S RIIYGG  NG
Sbjct:  195 ENVGADVAGSVRIIYGGSVNG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.204e-84
Identity = 147/193 (76.17%), Postives = 165/193 (85.49%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MARKFFVGGNWKCNGT+EEVKKIV+TLNEA+                     KS LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL++GLKVIACVGETLE+RE+GST+ VVA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWL 193          

HSP 2 Score: 35.039 bits (79), Expect = 1.204e-84
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVSA+VAA+TRIIYGG  NG
Sbjct:  196 NVSADVAATTRIIYGGSVNG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.485e-84
Identity = 147/193 (76.17%), Postives = 163/193 (84.46%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M RKFFVGGNWKCNGT+EEVKKI++TLN A+                     K+ LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYALS+GLKVIACVGETLE+RESGST+ VVA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWL 193          

HSP 2 Score: 35.4242 bits (80), Expect = 3.485e-84
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVAASTRIIYGG  NG
Sbjct:  196 NVSPEVAASTRIIYGGSVNG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 298.516 bits (763), Expect = 3.193e-82
Identity = 147/195 (75.38%), Postives = 161/195 (82.56%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            M RKFFVGGNWKCNGT+++V+KIV TLNE +                     KS LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYALS+GLKVIACVGETLEQRE+GST+ VVA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLKT
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKT 195          

HSP 2 Score: 28.4906 bits (62), Expect = 3.193e-82
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGG 705
            N S EVA STRIIYGG
Sbjct:  196 NASPEVAESTRIIYGG 211          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 281.952 bits (720), Expect = 1.206e-78
Identity = 141/193 (73.06%), Postives = 155/193 (80.31%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M RKFFVGGNWKCNGT+++V KIV  LNE +                     KS LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYALS+GLKVIACVGETLEQRESGST+ VVA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWL 193          

HSP 2 Score: 33.113 bits (74), Expect = 1.206e-78
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVSAEVA STRIIYGG   G
Sbjct:  196 NVSAEVAESTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 278.485 bits (711), Expect = 4.973e-77
Identity = 138/195 (70.77%), Postives = 156/195 (80.00%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            M RKFFVGGNWKCNGT  +V+ IV+TLN  +                     K  LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL++GLKVIACVGETLEQRE+GST+ VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLKT
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKT 195          

HSP 2 Score: 31.187 bits (69), Expect = 4.973e-77
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVA STRIIYGG   G
Sbjct:  196 NVSPEVAESTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 276.944 bits (707), Expect = 1.439e-76
Identity = 137/195 (70.26%), Postives = 154/195 (78.97%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            M RKFFVGGNWKCNGT E+V+ IV TLN  +                     K+ LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL++GLKVIACVGETLEQRE+GST+ VVAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLKT
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKT 195          

HSP 2 Score: 31.187 bits (69), Expect = 1.439e-76
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVA STRIIYGG   G
Sbjct:  196 NVSPEVAESTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.032e-67
Identity = 115/131 (87.79%), Postives = 126/131 (96.18%), Query Frame = 2
Query:  257 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALLNE+N+FVGDKVAYALS+GLKVIACVGETLEQRE+G+T+ VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKW 133          

HSP 2 Score: 36.5798 bits (83), Expect = 7.032e-67
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            DNVSAEV+ASTRIIYGG  +G
Sbjct:  136 DNVSAEVSASTRIIYGGSVSG 156          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.300e-65
Identity = 121/196 (61.73%), Postives = 135/196 (68.88%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            M RKFFVGGNWKCNGT E V KIV TLNE                        + L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA S GL VIAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLKT
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKT 196          

HSP 2 Score: 32.7278 bits (73), Expect = 1.300e-65
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVA+ TRIIYGG  NG
Sbjct:  197 NVSEEVASKTRIIYGGSVNG 216          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.597e-60
Identity = 110/199 (55.28%), Postives = 135/199 (67.84%), Query Frame = 2
Query:   65 IVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            +V MA   KFFVGGNWKCNGT E + K+VS LN A                      KS L     ++AQNCW+ KGGAFTGE+S E L +L   WVILGHSERR ++ E N+F+G K AYAL++G+ VIAC+GE LE+RE+G T  V  +Q KA A+ + +WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK
Sbjct:   64 VVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQV--KSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLK 260          

HSP 2 Score: 32.7278 bits (73), Expect = 2.597e-60
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVA+ TRIIYGG  NG
Sbjct:  262 NVSEEVASKTRIIYGGSVNG 281          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPJA2.915e-8677.84Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH1.204e-8476.17Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_PETHY3.485e-8476.17Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE3.193e-8275.38Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ1.206e-7873.06Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE4.973e-7770.77Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU1.439e-7670.26Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA7.032e-6787.79Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP1.300e-6561.73Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL2.597e-6055.28Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
back to top