FC930638

Overview
NameFC930638
Unique NameFC930638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9784 contig Ccv1_Contig9784:338..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 7.097e-81
Identity = 136/220 (61.82%), Postives = 170/220 (77.27%), Query Frame = 1
Query:    1 DLPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKGKKSCSPDFKASIAGHCDLLIKD 660
            DLP+   VR  ESRMDLLRAVI+GAEGTPYHDGLFFFD+ FP  YP+VPPNVHYHSGGLR+NPNLYNCGKVCLSLL TW G   EKW+P+ STMLQ+LVSIQALILNE+PYFNEPG+        GE +S +Y+E  F+LSLKTM+Y++RRPP+HF ++V  H++ R+HDI+ AC AY  GA +GS+VKG VQ + + ++S S  FK  +A     ++ +
Sbjct:  286 DLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAYKAGAPLGSMVKGGVQDLEEARQSGSKKFKTDVASFMQTVVDE 505          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.338e-79
Identity = 138/211 (65.40%), Postives = 159/211 (75.36%), Query Frame = 1
Query:    1 DLPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIHKGKKSCSPDFKASIA 633
            DLP+  FVR YESRMDLLRAVI+GA+GTPYHDGLFFFD+FFP  YP+ PP VHYHSGGLR+NPNLYNCGKVCLSLL TW G++ EKWIP+ STMLQVLVSIQ LILN++PYFNEPG+E       GE  S  Y+E  FILSLKTM+YT+RRPPK+F DF  GHF+  AHD+L AC AY +GA  G LVKG            S  F+  +A
Sbjct:  347 DLPEMIFVRAYESRMDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLSLLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNGATPGYLVKGAPDVEENSAGMSSLKFRTDVA 557          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.201e-65
Identity = 123/212 (58.02%), Postives = 146/212 (68.87%), Query Frame = 1
Query:    1 DLPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVK-GRVQKIHKGKKSCSPDFKASIA 633
            +LPD  FVR YE RMDLLRAVIVGA GTPY DGLFFFD   PSDYP+VPP+ +YHSGG RLNPNLY  GKVCLSLLNTW G  NE W P  S++LQVLVS+Q L+LN +PYFNE G++      EGE+ S  YNE  F+L+ KTM+Y +R+PPK F + +  HF +R + IL AC AYM G  +GSL K   V        S S  FK  +A
Sbjct:  865 NLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDAYMKGYLIGSLTKDASVIDERSSANSTSVGFKLMLA 1076          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.709e-64
Identity = 112/186 (60.22%), Postives = 138/186 (74.19%), Query Frame = 1
Query:    1 DLPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGS 558
            +LP+T +VRV E RMDLLRA +VGA GTPYHDGLFFFD+  P  YP+ PP VHYHSGG+RLNPNLY  G+VCLSLLNTW G   E W    S++LQ+L+S QAL+LNE+PYFNE G++      EGE+ S  YNE AF+++ K+M+  +R+PPKHF   V  HF  RA  +LAACKAYM+G  VGS
Sbjct:  677 NLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEGVPVGS 862          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.940e-39
Identity = 81/177 (45.76%), Postives = 110/177 (62.15%), Query Frame = 1
Query:   19 FVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYM 537
            FVR  E R+D+++ +I G   TPY +G F FDV+FP DYP+ PP V+  + G   +R NPNLYN GKVCLS+LNTW G   EKW P  S+ LQVLVS+Q+LIL   PYFNEPG+E       G + S  Y+      ++K  ML  +R P   F + +  HFY +  +I+A C+ ++
Sbjct: 4570 FVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 4746          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2O_MOUSE (Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.267e-37
Identity = 82/164 (50.00%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    4 LPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHF 492
            LPD   V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF
Sbjct:  966 LPDGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1128          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2O_HUMAN (Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.687e-37
Identity = 81/164 (49.39%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    4 LPDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHF 492
            LP+   V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF
Sbjct:  969 LPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1131          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC3_MIMIV (Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 72/180 (40.00%), Postives = 104/180 (57.78%), Query Frame = 1
Query:   61 VIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHS---GGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKAYMDGAEVGSLVKGRVQKIH 588
            +I G E +PY  G F F ++ PS YPN  P V   +   G +R NPNLY  GKVCLS+L TW G   E WIP +S+MLQV++SIQ+L+L   PYFNEPG+ES    ++G + S  YN++     +K  M+  ++ P   F   +  HF  +A  I   C+ +++ A   +  K   QK++
Sbjct: 1252 IITGPEDSPYDSGCFHFRMYNPSAYPNTSPFVSMTTTGHGSVRFNPNLYADGKVCLSILGTWRGQAGESWIPGVSSMLQVMISIQSLVLISEPYFNEPGYESSRGTDKGNKLSTEYNQKVRFNCMKWAMIDVIKNPVPGFESMIKKHFSIKAPHIKQVCQTWINEAPDNN--KSEYQKLY 1429          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   34 ESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHY---HSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 315
            E R+D+++ +I G + TPY +GLF FD+FFP+ YP  PP   +    SG +R NPNLYN GK+CLS+L TW+G   EKW P  S ++QVLVSIQ +I
Sbjct:  439 EGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCS-LMQVLVSIQEVI 534          
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 58/136 (42.65%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    7 PDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            P   FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   75 PPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-LSSVLISIQSL-MTENPYHNEPGFE----QERHSGDSKNYNE 201          
The following BLAST results are available for this feature:
BLAST of FC930638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBC26_ARATH7.097e-8161.82Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC25_ARATH1.338e-7965.40Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC23_ARATH3.201e-6558.02Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
UBC24_ARATH2.709e-6460.22Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
BIRC6_HUMAN3.940e-3945.76Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBE2O_MOUSE1.267e-3750.00Ubiquitin-conjugating enzyme E2 O OS=Mus musculus ... [more]
UBE2O_HUMAN3.687e-3749.39Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens ... [more]
UBC3_MIMIV9.399e-3340.00Probable ubiquitin-conjugating enzyme E2 R521 OS=A... [more]
UBC17_CAEEL1.964e-2252.58Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBE2Z_XENTR1.903e-1742.65Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionC34009F10EF PostHarvC1 Citrus clementina cDNA clone C34009F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930638 ID=FC930638; Name=FC930638; organism=Citrus clementina; type=EST; length=671bp
GATTTGCCAGATACTAGTTTTGTGAGGGTGTATGAATCAAGGATGGATCT
TTTGAGGGCCGTAATTGTAGGGGCAGAGGGAACTCCCTACCATGATGGCC
TGTTCTTCTTTGATGTTTTCTTCCCTAGTGATTATCCTAATGTACCTCCG
AATGTCCACTACCACTCCGGTGGCCTTCGACTCAATCCAAATTTATATAA
TTGTGGGAAGGTATGCCTTAGTCTTCTTAACACCTGGGATGGTGATAAGA
ATGAGAAGTGGATCCCTTCTATGTCAACCATGCTACAAGTTTTGGTCTCT
ATACAAGCACTGATCTTGAATGAAAGGCCTTACTTTAACGAACCTGGTTG
GGAAAGTATGGACAGCATGGAAGAAGGTGAAAGACAGTCCAATATGTACA
ATGAGCGTGCATTTATCTTGTCACTGAAGACAATGCTGTACACTGTCAGG
AGACCTCCAAAGCATTTCAATGATTTTGTTAGTGGCCACTTTTACCAGCG
TGCACATGATATTCTGGCTGCATGTAAAGCATACATGGATGGTGCTGAAG
TGGGTTCTCTGGTCAAAGGTCGTGTGCAGAAAATTCACAAGGGCAAAAAG
AGCTGCTCACCGGATTTTAAGGCCTCCATAGCTGGGCATTGTGATCTTCT
CATAAAAGATTTACATATATC
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