FC930643

Overview
NameFC930643
Unique NameFC930643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930643_ssr86 microsatellite FC930643_ssr86:86..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14279 contig Ccv1_Contig14279:9..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.264e-35
Identity = 89/138 (64.49%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  126 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 539
            MASVTGTS  M S   S   +  R            GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA LGADSLDTVEIVMGL           SAQ+I+TVQDAADLIEKLIE KS
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.752e-30
Identity = 78/136 (57.35%), Postives = 86/136 (63.24%), Query Frame = 3
Query:  129 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            ++  G S C+ S SCS     GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 77/137 (56.20%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  129 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            ++  G S C+ S S S     GR             KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 74/139 (53.24%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  129 ASVTGTSACMTSLSCSFKQTQ--GRXXXXXXXXXXXXGKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            A+   +  C+ S SCS  + Q                GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+  K
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 74/136 (54.41%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  129 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            ++   +S C+ S SCS     GR             KSF S   R +   RV+C AKPETV KVC IVKKQLALP D+ V+G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAPASSICIKSASCS-ALAPGRISSLRSVSLPVSRKSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  240 SFPSLRMR-SAPRFRVSCAA------KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 542
            SF S+  R S+ RF++ CAA      K ETVDKVC IVKKQLA+P  T VT ESKF+ LGADSLDTVEIVMGL           SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  252 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 542
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGL           SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  249 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLI 527
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT V+G S FA LGADSLDTVEIVMGL           SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  249 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
BLAST of FC930643 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.380e-21
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  249 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 536
            +LR     R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQAK 133          
The following BLAST results are available for this feature:
BLAST of FC930643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL5.264e-3564.49Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA1.752e-3057.35Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA3.654e-2856.20Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA1.063e-2753.24Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA9.000e-2754.41Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU2.075e-2360.19Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU1.756e-2258.16Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_HORVU6.675e-2261.70Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP_BRACM2.536e-2157.29Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_BRANA7.380e-2157.29Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionC34009G03EF PostHarvC1 Citrus clementina cDNA clone C34009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930643 ID=FC930643; Name=FC930643; organism=Citrus clementina; type=EST; length=733bp
GATTGCTCTCCTCTCAGTCTCAGACACACATTACATAGCACGCAGTCTTC
GTGCTCTTCGTCGTCCTCTCTCTCGCTCTCTCTCGCTCTCTCTCTTTTGA
ACTTCAAATCTCAGATCTCTATTCAATGGCTTCAGTTACAGGAACTTCAG
CCTGCATGACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGGGTAGGATC
TCTAGTGTGAATTCAGTTTCACTTTCCATCAATGGGAAAAGCTTCCCATC
CCTTAGAATGCGATCAGCACCCCGCTTCCGGGTTTCCTGTGCGGCCAAGC
CAGAGACTGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGTTGGCACTC
CCAGCAGATACTACCGTTACCGGAGAGTCAAAATTCGCTGCCCTTGGAGC
TGATTCTCTTGATACGGTTGAGATTGTGATGGGACTGGAGGAGGAATTTG
GGATCAGCGTTGAAGAAGAAAGTGCCCAGACCATCTCAACCGTTCAAGAT
GCTGCAGATCTGATTGAGAAGCTCATTGAGACCAAGAGTGCTTAACTAAA
ATGGTCTGGAGAGAGCCGGGGCTTAGGGACTTAGTTCGTCTAGTTTCGAT
TTCGATCTTTTTGTTGGCTTGTCTCTCAAGGAGTTTCTAGCTTGTATTGT
GAACTTGTCAGTGGTTTTTCTATTCTGTTGTTCCTTCTATTAGAGAGAAC
TCAATTAATCAGTTTGCTTGGATTATCATAACA
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