FC930645

Overview
NameFC930645
Unique NameFC930645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15192 contig Ccv1_Contig15192:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNY3 (Lysyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=lysS PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.791e-48
Identity = 99/173 (57.23%), Postives = 123/173 (71.10%), Query Frame = 3
Query:  207 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERL------LSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEV 707
            E +RA R++K E+LR  GL PYAY W+ TH A  LQE YR L+NGEE + +   V+           GKLAF TL+D+SGTIQLY EK+RL      L + F+ LK   D+GDILGV+G++KRTEKGELSV V ++ +LTKSLLPLPDK+HGLTD +KRYRQRYVD+I  P V
Sbjct:   11 EEIRATRLEKAEQLRQLGLNPYAYTWEITHQAQDLQETYRDLSNGEEVDLK---VAIAGRILARRVMGKLAFFTLQDESGTIQLYLEKQRLTEHMPELENAFNLLKKITDVGDILGVTGTLKRTEKGELSVYVQTYAVLTKSLLPLPDKWHGLTDTEKRYRQRYVDLIVNPTV 180          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_THEEB (Lysyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.807e-48
Identity = 97/171 (56.73%), Postives = 123/171 (71.93%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ----FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            +RA RI+K + L+++G+ PYAY+W+RTH+A  LQ+ Y HLA GE   +  D VS          FGKLAF TL+DDSGTIQLY +K+ +        F  LK   D+GDILG  G++KRTEKGELSV+V S+ +LTKSLLPLPDK+HGLTDV+KRYRQRYVD+I  P+V D
Sbjct:   11 IRATRIEKAKTLQAQGMSPYAYRWERTHTAALLQDKYAHLAAGE---AVGDRVSVAGRIMARRIFGKLAFFTLQDDSGTIQLYLDKQTISQTMGEAAFADLKHLTDVGDILGAVGTLKRTEKGELSVVVESYTMLTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPQVRD 178          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_NOSP7 (Lysyl-tRNA synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.378e-47
Identity = 99/174 (56.90%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  207 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEV 707
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  LA+GEE + E   V+          FGKLAF TL+D++GTIQLY +K R+        +D F+ LK   D GDILGV G++KRTEKGELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD+I  PEV
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEQFADLASGEEVDLE---VAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKNRIQESMADIDADAFNHLKQLTDAGDILGVKGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEV 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_ANAVT (Lysyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lysS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.378e-47
Identity = 97/174 (55.75%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  207 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEV 707
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  L +GEE ++E   V+          FGKLAF TL D++GTIQLY EK R+        +D F+ LK   D+GDILG  G++KRTEKGELS+ V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD+I  PEV
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVDTE---VAIAGRIMARRVFGKLAFFTLEDETGTIQLYLEKNRIQESMAETDADAFNHLKQLTDVGDILGAKGTIKRTEKGELSIYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEV 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_ANASP (Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=lysS PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.284e-46
Identity = 97/174 (55.75%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  207 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEV 707
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  L +GEE  +E   V+          FGKLAF TL D++GTIQLY EK R+        ++ F+ LK   D+GDILG  G++KRTEKGELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD+I  PEV
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVETE---VAIAGRIMARRVFGKLAFFTLEDETGTIQLYLEKNRIQESMAEIDANAFNHLKQLTDVGDILGAKGTIKRTEKGELSVYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEV 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNP6 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.735e-46
Identity = 97/174 (55.75%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            +RA R++K  +LR  G EPYAY+WD +HSA QLQ +Y  L  GEE   E   V+          FGKLAF TL+D+SG IQLY EK+RL        ++ F  LK   D+GDILGV GS++RTEKGELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRYVD+I  PEV +
Sbjct:    4 LRATRLEKALQLRELGFEPYAYRWDCSHSAAQLQALYADLPAGEEVAVE---VAIAGRIMARRVFGKLAFFTLQDESGQIQLYLEKQRLSESMAAIDAEAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRE 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNE7 (Lysyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.735e-46
Identity = 97/174 (55.75%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            +RA R++K  +LR  G EPYAY+WD +HSA QLQ +Y  L  GEE   E   V+          FGKLAF TL+D+SG IQLY EK+RL        ++ F  LK   D+GDILGV GS++RTEKGELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRYVD+I  PEV +
Sbjct:    4 LRATRLEKALQLRELGFEPYAYRWDCSHSAAQLQALYADLPAGEEVAVE---VAIAGRIMARRVFGKLAFFTLQDESGQIQLYLEKQRLSESMAAIDAEAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRE 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_GLOVI (Lysyl-tRNA synthetase OS=Gloeobacter violaceus GN=lysS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.577e-36
Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = 3
Query:  207 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL----SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            E +R  R++K E+ R     PY Y+++RTH A  LQ  Y+ L NG+E     D VS           G +AF  L+DDSGTIQLY +K+R+     +D F  L    D GD +G  G+++RTE+GELSV V+ + +L KS+LPLP +Y+GLTDV KRYRQRY+D+I+ P V +
Sbjct:    4 EDLRRTRLEKAEQWRVHNQNPYPYRYERTHMAGDLQAKYKDLENGQEVE---DAVSVAGRIVARRVLGSVAFFGLQDDSGTIQLYFDKKRIRESMGADAFKWLDKLTDTGDFIGAHGTIRRTERGELSVYVHEYELLCKSILPLPSEYYGLTDVQKRYRQRYLDLIANPGVRE 173          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNS3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=lysS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 79/164 (48.17%), Postives = 107/164 (65.24%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            +R  R++K   L+ +G EPYA ++D T    +LQ  +  LA G E + +   VS           GKLAF TL D++GTIQL+ EK  L  D F QL   VD GD++GV G ++RT++GELSV V+ + +LTKSL PLPDK+HGL DV+KRYRQRY+D+I  P+
Sbjct:    4 LRETRLEKANALKEQGQEPYALRFDLTDRMARLQADHADLAKGAERDLK---VSVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKATL-GDSFAQLSSLVDAGDLIGVHGILRRTDRGELSVKVSKWEMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIVTPQ 163          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNPW (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=lysS PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 77/164 (46.95%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            +R  R++KV  LR +G EPYA  +D +    +LQ  +  L  GEE +     V+           GKLAF TL D++GTIQL+ EK  L  + F Q+   VD GD++GV G+++RT++GELSV V  + +LTKSL PLPDK+HGL DV+KRYRQRY+D+I  P+
Sbjct:    4 LRETRLEKVSALRDQGREPYALTFDPSDRMARLQSDHADLPKGEERDCA---VAVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAAL-GEAFAQITSLVDAGDLIGVRGTLRRTDRGELSVKVAEWTMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIVTPQ 163          
The following BLAST results are available for this feature:
BLAST of FC930645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
SYK_SYNY31.791e-4857.23Lysyl-tRNA synthetase OS=Synechocystis sp. (strain... [more]
SYK_THEEB6.807e-4856.73Lysyl-tRNA synthetase OS=Thermosynechococcus elong... [more]
SYK_NOSP73.378e-4756.90Lysyl-tRNA synthetase OS=Nostoc punctiforme (strai... [more]
SYK_ANAVT3.378e-4755.75Lysyl-tRNA synthetase OS=Anabaena variabilis (stra... [more]
SYK_ANASP1.284e-4655.75Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC ... [more]
SYK_SYNP63.735e-4655.75Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_SYNE73.735e-4655.75Lysyl-tRNA synthetase OS=Synechococcus elongatus (... [more]
SYK_GLOVI4.577e-3645.66Lysyl-tRNA synthetase OS=Gloeobacter violaceus GN=... [more]
SYK_SYNS31.127e-3448.17Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_SYNPW9.543e-3446.95Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34009G05EF PostHarvC1 Citrus clementina cDNA clone C34009G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930645 ID=FC930645; Name=FC930645; organism=Citrus clementina; type=EST; length=716bp
GGAGTGGAGTGAAAGCAGAGAAAACAAAGATGGAGGCTTTGAAGTTGTGG
AGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCCGGCG
AACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACCGTTT
CCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCACTTCT
GACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAATTGAG
GAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCATTCTG
CAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGAGTCG
AATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTCGTAG
AGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGTACGA
TACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGATCAG
TTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCTCAAT
GAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTCGTGA
TTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTTAACT
GATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGATTTCAAAACC
TGAAGTAGCTGATGTA
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