FC930646

Overview
NameFC930646
Unique NameFC930646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15193 contig Ccv1_Contig15193:1..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930646 vs. ExPASy Swiss-Prot
Match: ACER3_MOUSE (Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  272 FWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTXXXXXXXXXXXXRQRFEKRFSVLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLLYMYILY 568
            +WGP TST++ CE+NY  + ++AEF+NT+SN+              R R EKR+   +++  ++ MGS  +H TL+   Q  DE PM++   +++Y ++
Sbjct:   10 YWGPTTSTLDWCEENYVVTLFVAEFWNTVSNLIMIIPPIFGAIQGIRDRLEKRYIAAYLALTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCMF 108          
BLAST of FC930646 vs. ExPASy Swiss-Prot
Match: ACER3_HUMAN (Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  272 FWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTXXXXXXXXXXXXRQRFEKRFSVLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLLYMYILY 568
            +WGP TST++ CE+NY+ + YIAEF+NT+SN+              R   EKR+   +++  ++ MGS  +H TL+   Q  DE PM++   +++Y ++
Sbjct:   10 YWGPTTSTLDWCEENYSVTWYIAEFWNTVSNLIMIIPPMFGAIQSVRDGLEKRYIASYLALTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCMF 108          
BLAST of FC930646 vs. ExPASy Swiss-Prot
Match: YPC1_YEAST (Alkaline ceramidase YPC1 OS=Saccharomyces cerevisiae GN=YPC1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  263 ISSFWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTXXXXXXXXXXXXRQRFEKRFSVLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLL 550
            +   WG  TSTI+ CE+NY  S YIAE+ NTL+N               + + EKRF ++     ++ +GS L+H TL+   Q  DE PM++ M +
Sbjct:   13 VPGVWGETTSTIDWCEENYVVSPYIAEWSNTLTNSVFILSAIYTTYSAYKNKLEKRFLLIGFGYGLVGVGSWLFHMTLKYRFQLLDELPMIYAMCI 108          
BLAST of FC930646 vs. ExPASy Swiss-Prot
Match: YDC1_YEAST (Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae GN=YDC1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  263 ISSFWGPVTSTIECCEKNYAYSSYIAEFYNTLSNIPTXXXXXXXXXXXXRQRFEKRFSVLHISNMILAMGSMLYHATLQRVQQQSDETPMVWEMLLYMYILYS 571
            I  +WG  TS I+ CE+NY  S YIAE+ NT++N               R + E R+ ++ +   ++ +GS L+H TLQ   Q  DE PM++  ++  + +++
Sbjct:   12 IEGYWGKPTSLIDWCEENYVVSPYIAEWSNTITNSIFLMTAFYSTYSAWRNKLETRYILIGMGFSLVGIGSWLFHMTLQYRYQLLDELPMLYATIIPSWSIFA 114          
The following BLAST results are available for this feature:
BLAST of FC930646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACER3_MOUSE2.558e-1534.34Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=... [more]
ACER3_HUMAN5.699e-1535.35Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=... [more]
YPC1_YEAST1.716e-1136.46Alkaline ceramidase YPC1 OS=Saccharomyces cerevisi... [more]
YDC1_YEAST8.517e-1132.04Alkaline ceramidase YDC1 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionC34009G06EF PostHarvC1 Citrus clementina cDNA clone C34009G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930646 ID=FC930646; Name=FC930646; organism=Citrus clementina; type=EST; length=703bp
GGAAGACAGAAGGTCAAATAAACAAAAGCCAAGTGGTGTATGTCTTTCTC
GTTGCTCGATTGCCCAAAAGAGAATTCGTTTCTTTTTAAGATTAGAGAGA
CACCGTAAGAGAGATTAAATTAAAGCCAAAGCAAGTAACAATGATATCTC
TTCCATCGTACAAGGCACATTGTTTTCTTTAACCTCTAAGACATCCTAGC
TTGAGAGATTCGGTTTGATATACTTACGTTTTTTTCATACATATTGGAGA
ATGGCTGATGGAATATCAAGTTTTTGGGGTCCTGTCACATCTACCATTGA
GTGCTGTGAGAAGAATTATGCCTACTCCTCATACATTGCAGAATTTTATA
ACACCTTATCGAATATCCCAACCATTCTTTTGGCACTCATTGGTCTTATA
AATGCCTTGAGACAACGTTTTGAGAAGAGATTTAGTGTTCTTCATATATC
TAATATGATACTTGCCATGGGAAGCATGTTGTACCACGCCACATTGCAGC
GTGTGCAACAACAGAGTGATGAAACCCCTATGGTATGGGAGATGCTTTTA
TATATGTATATCCTGTACTCGCCAGATTGGCACTACCGCAGTACAATGCC
CACTTTCCTCTTTCTCTATGGTGCTGTGTTTGCAGTTGTCCATTCAGTGG
TACATTTTGGCATTGGCTTTAAGTTGCATTATGTGATCCTTTGCCTCCTC
TGC
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