FC930649

Overview
NameFC930649
Unique NameFC930649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PDP_DIACA (Petal death protein OS=Dianthus caryophyllus GN=PDP PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 53/143 (37.06%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   10 SDIVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVP--KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI--KGGRIPSPGSMPSFEEIKETLGFNTYYEEEKRY 426
            SD  LVARTD+R    LEE +RR+  + +AGAD  F++A A+ +E+K   E+S      ++ANM+E GGKTP+  P E +E+GF L+A+ L+ +  + RA+ + +  +  KG        M +F E  E +   ++YE E ++
Sbjct:  172 SDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELK---EVSAKTKGLRIANMIE-GGKTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKEKGTTRDDLDQMATFSEFNELISLESWYEMESKF 310          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: CPPM_STRHY (Carboxyvinyl-carboxyphosphonate phosphorylmutase OS=Streptomyces hygroscopicus GN=bcpA PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   13 DIVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAF-CEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSP-----GSMPSFEEIKETLGFNTYYEEEKRY 426
            D  ++ARTD+R++  L+E++RRSR +  AGAD +F++A+   EEMK    EI    P +ANM+E GGKTP L   ELE +G+ L  YPLS    +   ++   T ++            G   SF E+ E   ++   E E R+
Sbjct:  150 DFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEID--APLLANMVE-GGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAGTTQKFWDDMGLKMSFAELFEVFEYSKISELEARF 290          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: CPPM_ARATH (Putative carboxyvinyl-carboxyphosphonate phosphorylmutase OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   10 SDIVLVARTDSRQALS---LEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVP--KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK--GGRIPSPGSMPSFEEIKETLGFNTYYEEEKRYATSMRRLSS 453
            SD  LVARTD R   +   LE+++ R   + +AGAD  F++A    +E+K   EI       ++ NM+EGG  TP+  P EL+E+GF L+ +PL+ +  S RA+ D L  +K  G        M +FEE    +  ++++E E RY+     L +
Sbjct:  186 SDFFLVARTDVRATSAKSGLEDAIARVNLYMEAGADASFVEAPRDDDELK---EIGKRTKGYRVCNMIEGG-VTPLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKTLKENGSTRDHLQKMATFEEFNSLVDLDSWFELEARYSNLRNALGT 336          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PRPB_BACSU (Methylisocitrate lyase OS=Bacillus subtilis GN=prpB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 47/148 (31.76%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 ESGSDIVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK--GGRIPSPGSMPSFEEIKETLGFNTYYEEEKRYATSM 438
            ++   +++VARTD+R    L+ +++RS A+ +AGAD +F +AL ++ E + F E  P VP +ANM E  GKTP     E E++GF +V YP++ +  + +A +     +K  G +      M + +E+ +T+ +  Y   +K  A ++
Sbjct:  152 QAAPSLIVVARTDARAQEGLDAAIKRSEAYIEAGADAIFPEALQAENEFRQFAERIP-VPLLANMTE-FGKTPYYRADEFEDMGFHMVIYPVTSLRAAAKACERMFGLMKEHGSQKEGLHDMQTRKELYDTISYYDYEALDKTIAKTV 297          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PRPB_BACHD (Methylisocitrate lyase OS=Bacillus halodurans GN=prpB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 46/143 (32.17%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   16 IVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPG--SMPSFEEIKETLGFNTYYEEEKRYATSM 438
            +V+VARTD+R    L  ++ R+  + +AGAD +F +AL S EE +   E +   P +ANM E  GKTP++    L+  GF++V YP++ + V+ +A +     IK       G   M + +E+ ET+ ++ +   +K  A ++
Sbjct:  157 LVIVARTDARANEGLNGAIERANVYIEAGADAIFPEALQSAEEFRLVAE-NVSAPLLANMTE-FGKTPLMTAGGLQNAGFQMVIYPVTSLRVAAKAYERIFQLIKDEGTQEAGIEDMQTRKELYETISYDDFEALDKNIAKTV 297          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PRPB_AERPE (Methylisocitrate lyase OS=Aeropyrum pernix GN=prpB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 48/146 (32.88%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   13 DIVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI--KGGRIPSPGSMPSFEEIKETLGFNTYYEEEKRYATSMRR 444
            D ++VARTD+R     E+++ R++ + +AGAD++F +AL S EE + F       P +ANM E  GKTP +   +  E G+K+V +P++    S++A +  L  I  KG +      + +  E  + +G++ Y   EKR A   R+
Sbjct:  154 DALIVARTDARGVEGFEKAVERAQLYVEAGADIIFPEALTSLEEFREFAR-RVKAPLLANMTE-FGKTPYITVDQFREAGYKIVIFPVTTFRASLKASETVLREIMEKGTQKDILDKLYTRTEFYDLIGYHDY---EKRDAEVSRK 294          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PRPB1_CORGL (Probable methylisocitrate lyase 1 OS=Corynebacterium glutamicum GN=prpB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 37/106 (34.91%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   13 DIVLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 330
            + V+ ARTD+     ++ ++ R++A+ DAGAD++F +AL S+ + + F    P    +ANM E  GKT +L+   LEE+G+  V YP++ + +++  ++ AL  IK
Sbjct:  157 NFVICARTDAAGVEGIDAAIERAKAYLDAGADMIFTEALHSEADFRYFRHAIPDALLLANMTE-FGKTTLLSADVLEEIGYNAVIYPVTTLRIAMGQVEQALAEIK 261          
BLAST of FC930649 vs. ExPASy Swiss-Prot
Match: PRPB2_CORGL (Probable methylisocitrate lyase 2 OS=Corynebacterium glutamicum GN=prpB2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   19 VLVARTDSRQALSLEESLRRSRAFTDAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSP--GSMPSFEEIKETLGFNTY 405
            V+ ARTD+     ++ ++ R++A+ DAGAD++F +AL S  + + F   +  +P +ANM E  GKT +L    LE++G+  V YP++L+ +++  ++ AL  I    I +     M     + E L +N Y
Sbjct:  160 VICARTDAAGVEGIDSAIERAKAYADAGADMIFTEALYSPADFEKF-RAAVDIPLLANMTE-FGKTELLPAQLLEDIGYNAVIYPVTLLRIAMGQVEQALGDIANTGIQTDWVDRMQHRSRLYELLRYNEY 288          
The following BLAST results are available for this feature:
BLAST of FC930649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PDP_DIACA4.112e-1837.06Petal death protein OS=Dianthus caryophyllus GN=PD... [more]
CPPM_STRHY8.575e-1636.81Carboxyvinyl-carboxyphosphonate phosphorylmutase O... [more]
CPPM_ARATH3.259e-1534.84Putative carboxyvinyl-carboxyphosphonate phosphory... [more]
PRPB_BACSU5.558e-1531.76Methylisocitrate lyase OS=Bacillus subtilis GN=prp... [more]
PRPB_BACHD3.050e-1332.17Methylisocitrate lyase OS=Bacillus halodurans GN=p... [more]
PRPB_AERPE5.202e-1332.88Methylisocitrate lyase OS=Aeropyrum pernix GN=prpB... [more]
PRPB1_CORGL9.811e-1234.91Probable methylisocitrate lyase 1 OS=Corynebacteri... [more]
PRPB2_CORGL6.359e-1132.06Probable methylisocitrate lyase 2 OS=Corynebacteri... [more]
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Properties
Property NameValue
Genbank descriptionC34009G09EF PostHarvC1 Citrus clementina cDNA clone C34009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930649 ID=FC930649; Name=FC930649; organism=Citrus clementina; type=EST; length=695bp
GAAAGTGGCTCTGACATTGTTCTTGTGGCTCGAACTGATTCGCGCCAAGC
TCTGTCTCTGGAGGAATCACTCCGGAGGTCAAGGGCTTTTACTGATGCCG
GAGCTGATGTTCTTTTTATTGATGCACTTGCCTCAAAGGAAGAGATGAAG
GCTTTCTGTGAAATCTCTCCTCTAGTTCCAAAAATGGCCAATATGCTTGA
AGGTGGAGGAAAAACACCAATACTTAATCCACTTGAGCTTGAAGAGCTCG
GATTTAAACTTGTGGCATACCCCCTTTCCCTGATAGGAGTTTCCGTTCGA
GCAATGCAGGATGCACTTACTGCCATTAAAGGAGGTCGTATTCCTTCACC
TGGAAGTATGCCGTCTTTTGAAGAAATCAAGGAAACCTTAGGGTTCAACA
CTTACTATGAAGAAGAGAAGCGTTATGCCACTAGTATGAGGAGGTTGTCT
TCAGAAAATGTGACCAGTAACTCATACGATACACAACCAATGGCTCAAGA
TGACACAGCACGGAGGGGTCAAAGTTCCCAAGATCCTATTGTCGAAGTGA
TTACTCCTGAAGTATACACCAACTCTGGTGCAGGTGGTTCGAGGGATGCT
TTCTCTGGGATCTGGTCTCGGACATTAAGAGTTAAAATCACTGGCAGAGA
TGGATTTGAGAAACTTGATGTTAGAATTCCTGCTGGATTTTTGGA
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