FC930650

Overview
NameFC930650
Unique NameFC930650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15195 contig Ccv1_Contig15195:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930650 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  502 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDD 669
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD 62
The following BLAST results are available for this feature:
BLAST of FC930650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH8.670e-1457.14Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionC34009G10EF PostHarvC1 Citrus clementina cDNA clone C34009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930650 ID=FC930650; Name=FC930650; organism=Citrus clementina; type=EST; length=727bp
GGCTGAGAAATCGGTGGGAAGTGAAGGGGAATCTTAAAAGAAAATTGTAG
TATTTTCATAAAGGGCCTAACAGATCTGTATCATGTTTGTAAAATTTTGA
GTTATCCATGTATGAAATTTTGGATTTTTCACATGCATATTGTATGAAAA
ATTCAATTTTGGACATGTGTTTGATTTCTTGATTTCGAGGGATAAGTTTA
TTTGTATCAGCTGTGTTGGTCCGATCTGATGTTTGGATGCATGTATTTAT
ATGTATTTGGAATTGCTTTGAAATGGGTTTTCAAATTATACAAACATTGA
ATCTGATAGTTGGATGAACTGGCTTTTGTGGATTTGGATGGAGATGTTGT
GGTGGGTGTGGCTTTTTCCCTCGGATTCATGACATTTTGATGTCGATTGA
GGAGTTGGACAGATTTTCATTTTTTTGTTTTTGATTTTTGTTGATTTGGG
CTGCAGATCAGAAGTGAGAATTGGACTTTGATGGCGCTAGTTTCAGGAAG
GTCGACGTTGAACCCCAATGCCCCACTCTTCATTCCAGCTGCTTTTCGCC
AAGTGGAGGATTTCTCCCCCGAATGGTGGCAGCTGATCACGACCTCCACA
TGGTACCACAACTACTGGCTCAGCCAGCATCAAGATGAGGATGGCTTTTA
TGACAATGGTGGAGATGATGAATTTGATGTCAGCAATGTAGCTGACTTGC
TTCCAGATACGTTTGACCTTTGATGCT
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