FC930652

Overview
NameFC930652
Unique NameFC930652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.622e-89
Identity = 150/207 (72.46%), Postives = 179/207 (86.47%), Query Frame = 2
Query:  101 MATDTAVAEHRSSNNG--HGCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPAFGYDF 712
            MAT+T V    + +NG   GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLGD++GNA+GNGFLLLDS+FN+K RWEKPGHSP +GYDF
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIKNRWEKPGHSPLYGYDF 207          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.468e-66
Identity = 116/187 (62.03%), Postives = 141/187 (75.40%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE  G S  FGYDF
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKGNWEVEGESAQFGYDF 189          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.498e-66
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIY+VD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WEKPG     GYDF
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKGTWEKPGGEAPMGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66
Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LGD  GN +G+ F+LLD E F VKG WEKPG +   GYDF
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGS-FVLLDGETFEVKGTWEKPGDAAPMGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.225e-65
Identity = 115/187 (61.50%), Postives = 142/187 (75.94%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIY+VD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE+PG +   GYDF
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKGTWERPGGAAPLGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65
Identity = 113/187 (60.43%), Postives = 141/187 (75.40%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LGD  GN +G+ F+LLD E F VKG WEKPG +   GYDF
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGS-FVLLDGETFEVKGTWEKPGGASPMGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65
Identity = 116/187 (62.03%), Postives = 143/187 (76.47%), Query Frame = 2
Query:  158 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+Y+VD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LGD  GN +G GF+LLD E F VKG WE+PG +   GYDF
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKGTWEQPGGAAPMGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.037e-64
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+Y+VD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LGD  GN +G GF+LLD E F VKG WE  G +  FGYDF
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKGNWEAEGETAQFGYDF 189          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.769e-64
Identity = 112/187 (59.89%), Postives = 140/187 (74.87%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIY+VD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E F V G WE+PG +  FGYDF
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWEQPGDAAPFGYDF 190          
BLAST of FC930652 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.497e-63
Identity = 112/187 (59.89%), Postives = 138/187 (73.80%), Query Frame = 2
Query:  155 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDF 712
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD E F VKG WE  G +  FGYDF
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWEAEGEAAPFGYDF 189          
The following BLAST results are available for this feature:
BLAST of FC930652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH4.622e-8972.46Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA2.468e-6662.03Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_RAT5.498e-6661.50Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE7.181e-6660.96Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1_HUMAN1.225e-6561.50Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP2_MOUSE2.089e-6560.43Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1_BOVIN2.089e-6562.03Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1B_XENLA1.037e-6460.43Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_DANRE1.769e-6459.89Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1_XENTR1.497e-6359.89Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009G12EF PostHarvC1 Citrus clementina cDNA clone C34009G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930652 ID=FC930652; Name=FC930652; organism=Citrus clementina; type=EST; length=714bp
GATCAGCGTGTGATTGCGTTCTTATCATCCATTCGCTTCCTATCTTGATC
TTTCTTCAAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTCTTGTAAGAA
ATGGCAACTGATACTGCGGTGGCTGAACACCGGTCGAGCAATAATGGCCA
TGGTTGCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGT
CTGGTCCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACT
GGAAGAGAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTC
TTCTTCTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGCG
ATGAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGAT
TCATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCG
TATATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATA
AAGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCT
CACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGG
AGATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAG
AATTCAATGTGAAAGGAAGATGGGAAAAACCAGGTCACAGTCCTGCTTTC
GGTTATGATTTCTG
back to top