FC930654

Overview
NameFC930654
Unique NameFC930654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15197 contig Ccv1_Contig15197:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SERP5 (Probable phosphoglycerate mutase gpmB OS=Serratia proteamaculans (strain 568) GN=gpmB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN   ++Q   D  L   G  QA  VA+R++K+  I+ + +SDL R   TAQ IA  CG  +VI DP LRE H+G L+  +            +  + G  D  IP  GES+ +L  R   AL+       G + ++V+HG
Sbjct:    3 QVYLVRHGETEWNAARRIQGQSDSPLTANGEHQARLVAQRVSKQ-GITHVITSDLGRTRRTAQIIAEACG-CEVINDPRLRELHMGVLEERLIDSLTPQEEQWRKQMVDGTADGRIP-QGESMSELGDRMREALESCLMLPEGSKPLIVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ESCF3 (Probable phosphoglycerate mutase gpmB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gpmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  ++ DP LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  SAL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDILLDPRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTKDGRIP-QGESMLELSERMHSALASCLELPQGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_YERE8 (Probable phosphoglycerate mutase gpmB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 54/152 (35.53%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN   ++Q   D  L  VG  QA  VA+R+  +  I+ I +SDL R  +TA+ IA+ CG LKV+ DP LRE ++G L+               +  ++G     IP  GES+ +L RR  +AL        G + ++V+HG
Sbjct:    3 QVFLVRHGETVWNASRQIQGQSDSPLTAVGERQAHLVAQRVRSQ-GITHIITSDLGRTQQTAKIIADACG-LKVVTDPRLRELNMGVLETRPIESLTPEEEQWRKQMINGTEGGRIP-EGESMAELGRRMRAALDSCLELPAGSKPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_PHOLL (Probable phosphoglycerate mutase gpmB OS=Photorhabdus luminescens subsp. laumondii GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GE+ WN   ++Q   D  L E G  QA  VA+R+  E  I+ I +SDL R   TA+ IA  CG  ++I +P LRE H+G L+               +  L G     IP G ES+D+L  R  +AL+      +G R ++V+HG
Sbjct:    3 QVYLVRHGESEWNAARRIQGQSDSPLTETGEHQARLVAQRVKSE-SITHIITSDLGRTRRTAEIIAKVCG-CEIILEPRLRELHMGVLERRNIDSLTSEEEKWRKKVLDGTPGGRIPKG-ESMDELAVRMRAALENCRNLPVGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: PHOE_BACSU (Uncharacterized phosphatase phoE OS=Bacillus subtilis GN=phoE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.655e-13
Identity = 50/157 (31.85%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  248 IIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHGGVIRTL 712
            + +VR GET WN+Q K Q   D+ LN  G  QA    E   K+F   +I +S LKRA  TA+ I N    L ++E  + +ER  GD +G+   E  K  P             +I    E+L++L  R    L ++ + +  +++++V HG  I  L
Sbjct:    4 VCLVRHGETDWNLQQKCQGKTDIPLNATGERQARETGE-YVKDFSWDIIVTSPLKRAKRTAE-IINEYLHLPIVEMDDFKERDYGDAEGMPLEERTKRYP------------DNIYPNMETLEELTDRLMGGLAKVNQAYPNKKVLIVAHGAAIHAL 146          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SHISS (Probable phosphoglycerate mutase gpmB OS=Shigella sonnei (strain Ss046) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SHIFL (Probable phosphoglycerate mutase gpmB OS=Shigella flexneri GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SHIF8 (Probable phosphoglycerate mutase gpmB OS=Shigella flexneri serotype 5b (strain 8401) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SHIBS (Probable phosphoglycerate mutase gpmB OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_SHIB3 (Probable phosphoglycerate mutase gpmB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
The following BLAST results are available for this feature:
BLAST of FC930654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GPMB_SERP51.641e-1335.53Probable phosphoglycerate mutase gpmB OS=Serratia ... [more]
GPMB_ESCF32.143e-1336.84Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_YERE82.798e-1335.53Probable phosphoglycerate mutase gpmB OS=Yersinia ... [more]
GPMB_PHOLL2.798e-1335.53Probable phosphoglycerate mutase gpmB OS=Photorhab... [more]
PHOE_BACSU3.655e-1331.85Uncharacterized phosphatase phoE OS=Bacillus subti... [more]
GPMB_SHISS4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIFL4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIF84.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIBS4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIB34.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]

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Properties
Property NameValue
Genbank descriptionC34009H02EF PostHarvC1 Citrus clementina cDNA clone C34009H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930654 ID=FC930654; Name=FC930654; organism=Citrus clementina; type=EST; length=771bp
GATGAGTACACTGCGCACTTGGTGCACTTTTAAACTACCGGGCCGTTTTA
CCGCTACGCGTTTAATTTCATCAGCACATTCCGTCTCTGTTAATAATATT
CTTGCATGCGTAAAAATCCCAAAACATTTCTGCGCGGAATCGGAACGGAT
TCAGAGGCACTCAAAACCCGGGAACATGGCCGAGTCAACGGAGTCTCCAG
CAGTCATGAACGGCAGCTCTGCCTCTGTTGGGCCTGATTATTGTGAGATC
ATTGTGGTGCGTCGCGGTGAAACGCCTTGGAACGTTCAAGGAAAAGTTCA
GTTAGATGTTGAATTGAATGAAGTTGGAAGAGAGCAAGCTGTTTCTGTGG
CTGAGCGGCTGGCTAAGGAATTTAAAATTTCTGTTATCTATTCTTCTGAC
CTGAAGCGAGCACTCGAAACTGCACAGACAATTGCAAACAGATGTGGTGG
GCTAAAGGTCATTGAAGATCCTGAACTAAGGGAAAGACATCTTGGAGATC
TTCAAGGCCTTGTTTTCCGTGAAGCAGCCAAAGTCTGTCCTATAGCATAT
CAAGCATTTTTATCTGGCAAGACAGATCAAGATATCCCTGGTGGTGGAGA
AAGTCTTGATCAACTTTATCGACGGTGCACGTCTGCATTGCAGAGAATTG
CTAGGAAGCATATAGGAGAGCGAATAGTAGTTGTGACTCATGGTGGTGTA
ATCAGAACACTCTACCACGGGCTTGCTCAACAAAAAGCTGAAGGTAGGTC
CTGAATCATCTATCACATATT
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