FC930655

Overview
NameFC930655
Unique NameFC930655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.662e-56
Identity = 103/132 (78.03%), Postives = 122/132 (92.42%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQL 132          

HSP 2 Score: 28.1054 bits (61), Expect = 1.662e-56
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSIS 604
            +L + LK IR+RKNQLM +SI+
Sbjct:  131 QLDTALKHIRTRKNQLMYESIN 152          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.169e-56
Identity = 103/132 (78.03%), Postives = 121/132 (91.67%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQL 132          

HSP 2 Score: 28.4906 bits (62), Expect = 2.169e-56
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSIS 604
            +L + +K IRSRKNQ M +SIS
Sbjct:  131 QLDAAIKSIRSRKNQAMFESIS 152          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.266e-56
Identity = 101/132 (76.52%), Postives = 121/132 (91.67%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY Y+++QL   +I  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQL 132          

HSP 2 Score: 28.4906 bits (62), Expect = 6.266e-56
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSIS 604
            +L + +K IRSRKNQ M +SIS
Sbjct:  131 QLHAAIKSIRSRKNQAMFESIS 152          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.487e-55
Identity = 114/181 (62.98%), Postives = 137/181 (75.69%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI-XFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRKGEAIE 687
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY +AERQL   +    G+WTLE++KLKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+        S K +  H SI     +   + E+  QL  +  +R+ E  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQ 181          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.236e-55
Identity = 112/176 (63.64%), Postives = 139/176 (78.98%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI-XFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRK 672
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+        S K +  H SI+    ++  + E+   L  Q  +R+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKERE 176          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.126e-54
Identity = 114/179 (63.69%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI-XFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRKGEA 681
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY +AE+QL   +     +WTLE+ KLKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+        S K +  H SI     +   + E+  QL  +  +R+  A
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKSA 179          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.328e-53
Identity = 112/178 (62.92%), Postives = 135/178 (75.84%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI-XFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRKGE 678
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY +AE+QL   +    G+WTLE +KLKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+        S K +  H SI     +   + E+  QL  +  +R+ E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKE 178          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.784e-52
Identity = 97/134 (72.39%), Postives = 121/134 (90.30%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG--NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY YAERQL A +   N   NW++EYS+LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQL 134          

HSP 2 Score: 27.7202 bits (60), Expect = 1.784e-52
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSIS 604
            +L + LK IRSRKNQLM +S++
Sbjct:  133 QLETALKHIRSRKNQLMNESLN 154          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIXFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQE 660
            MGRG+VQLKRIENKINRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+      +S+K        H R+ +   ++E   +L  +E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQL-----ENSLK--------HIRSRKSQLMLESINELQRKE 158          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 9.502e-51
Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRG+VQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVA IVFS KGKL+EY+TDS M++ILERYERY YAE+ L + E E  GNW  EY KLKA++E +Q+  KH MGEDL  L+LKELQ +EQQ+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQL 132          

HSP 2 Score: 26.5646 bits (57), Expect = 9.502e-51
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSIS 604
            +L S LK I SRK+ LML+SIS
Sbjct:  131 QLESSLKHIISRKSHLMLESIS 152          
The following BLAST results are available for this feature:
BLAST of FC930655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AP1_ARATH1.662e-5678.03Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_ARATH2.169e-5678.03Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL6.266e-5676.52Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLTU2.487e-5562.98Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_SINAL7.236e-5563.64Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AGL8_SOLLC6.126e-5463.69Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO2.328e-5362.92Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
CAL_ARATH1.784e-5272.39Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD14_ORYSJ1.277e-5161.99MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD15_ORYSJ9.502e-5173.48MADS-box transcription factor 15 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34009H03EF PostHarvC1 Citrus clementina cDNA clone C34009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930655 ID=FC930655; Name=FC930655; organism=Citrus clementina; type=EST; length=697bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATCTCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATATG
GGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACA
AGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGA
TCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAA
GGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTTGA
ACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGA
TTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGG
ATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGC
AGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGNATTCT
GGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCAT
TTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGN
CTTGCAAGAAGGTAAAAGAAAAGGAGAAGCTATTGAGCCAAAGAGCG
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