FC930656

Overview
NameFC930656
Unique NameFC930656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:13..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.392e-70
Identity = 128/216 (59.26%), Postives = 155/216 (71.76%), Query Frame = 2
Query:   71 MPEKITAENISDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSFLN 718
            MP+K   E++  +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ             +GSCCNFLTVLYIGFV AHT+PVLYE++EDEVD F++
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 215          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.432e-38
Identity = 80/168 (47.62%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.107e-38
Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT+P+LYEKHED+VD
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.900e-36
Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  LK+             +G C NFLT+ YI  V   T+P+ Y+K+ED+VD
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DI+ G  LK+             +GS CNFLT++YI  V   T+PVLYEK+ED+VD F
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDF 216          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.301e-35
Identity = 64/170 (37.65%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +K+             +G C +FLT+ YI  V   T+P+ Y+K+ED+VDS+
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSY 237          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 71/170 (41.76%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712
            RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++I+ G  +K+             IGSC NFLT+ Y   V   T+PVLYEK+ED+VD++
Sbjct:   51 RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAY 220          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDS 709
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG                  IG+  NF+ +L+IGFV+  TLPV+YE +ED+VD+
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDT 190          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28
Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ I+    +K              IG+  +FL++LYI FV  HT+P+LYEK+EDE+D
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217          
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D++ G   +              IGS  +  T+LYIG + + T+P LY K++ +VD
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191          
The following BLAST results are available for this feature:
BLAST of FC930656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLH_ARATH5.392e-7059.26Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.432e-3847.62Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH7.107e-3844.64Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH3.900e-3640.48Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.482e-3541.76Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.301e-3537.65Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH7.355e-3541.76Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH3.535e-2936.69Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH6.668e-2837.50Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH5.467e-2231.55Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34009H04EF PostHarvC1 Citrus clementina cDNA clone C34009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930656 ID=FC930656; Name=FC930656; organism=Citrus clementina; type=EST; length=759bp
GACGGACACAACTCCAATCATCTACTCAACAGACCCCATTTTTTTCCTTT
TTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAGAACATT
TCGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAGCAGAAAGC
TGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTCGTTTCA
ATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGCGGTGGA
AAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGCCAGTGT
ATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTAACTACC
ATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTTGCTCAA
TTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCACCATCAAAAGT
TCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGACAG
TTTGTGCTAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCATGT
GGAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGC
TGCTGTGATAGGGAGCTGTTGTAACTTTTTGACCGTTCTATATATTGGTT
TTGTTGCTGCCCATACATTGCCAGTCCTGTATGAGAAGCATGAAGATGAA
GTTGACAGCTTTCTGAACATGTCTTCCAGCAGCTCCAGATCAGTACAAGA
GCTTGATTC
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