FC930656
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 5.392e-70 Identity = 128/216 (59.26%), Postives = 155/216 (71.76%), Query Frame = 2 Query: 71 MPEKITAENISDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSFLN 718 MP+K E++ +LV+ ++ VQK K RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG NRS S+VPR VLP + FA +G V VN L LQD++C G LKQ +GSCCNFLTVLYIGFV AHT+PVLYE++EDEVD F++ Sbjct: 1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 215
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.432e-38 Identity = 80/168 (47.62%), Postives = 108/168 (64.29%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706 RLFGR+KPVH +LGGG ADV LWR+KK+SASVL ATAIWVLFE + YHFL++VC L+ + A F N N++P K+P + E F I + + +N+A +L+ I+ G LK+ +G+ NFLT++YI FV HT+P+LYEKHED+VD Sbjct: 51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.107e-38 Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706 R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL ATAIWVLFE + YH L+++C +L + F W N L N++ ++P +P E F + +++ +N+A +L+ I+ G LK+ +G+ NFLT++YI FV HT+P+LYEKHED+VD Sbjct: 51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.900e-36 Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706 RLFGR++PVH +LGGGK AD+ +W+NKK+S VL GATA WV+FE + YH LT++C +++ + F W N + N+SP K+P +P E + + + +N L++I+ G LK+ +G C NFLT+ YI V T+P+ Y+K+ED+VD Sbjct: 72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35 Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712 RLFGR++P+H L GGGK AD+ LWRNKK+S VL AT W+LFE L Y+ LT+ +L + F W + S ++SP +P +P +V + + + +N +L+DI+ G LK+ +GS CNFLT++YI V T+PVLYEK+ED+VD F Sbjct: 47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDF 216
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.301e-35 Identity = 64/170 (37.65%), Postives = 103/170 (60.59%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712 RLFGR++PVH +LGGGK AD+ +W++KK+S V GAT WVLFE + YH LT++C +++ + F W N + ++SP K+P +P E + + + +N + L++I+ G +K+ +G C +FLT+ YI V T+P+ Y+K+ED+VDS+ Sbjct: 68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSY 237
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35 Identity = 71/170 (41.76%), Postives = 98/170 (57.65%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSF 712 RLFGR+KPVH +LGGGK AD+ LWRNKK+S VL TA WVLFE YH L +C + + A F W N ++S +P +P + + + + +N L LL++I+ G +K+ IGSC NFLT+ Y V T+PVLYEK+ED+VD++ Sbjct: 51 RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAY 220
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29 Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDS 709 +LF RQ+ +H + GGGK AD+LLWR KI+A++++G + +W L E + Y+F+T++C A + ML F W S N +P VL F + + N+ L L D++CG IG+ NF+ +L+IGFV+ TLPV+YE +ED+VD+ Sbjct: 22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDT 190
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 6.668e-28 Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706 R+FGR++P+H +LGGGK ADVLLWR+KK++ +L T IW+LF + LT +C +L +L F W S N+SP + +P + + + +N A L+ I+ +K IG+ +FL++LYI FV HT+P+LYEK+EDE+D Sbjct: 53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217
BLAST of FC930656 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22 Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 2 Query: 203 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 706 RL GRQ VH +GGGK+AD+LLWR + +S V++ +T W++FE+ FL++ L++ ++ F +S NR +P VL E+ + + +N L + D++ G + IGS + T+LYIG + + T+P LY K++ +VD Sbjct: 24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191 The following BLAST results are available for this feature:
BLAST of FC930656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930656 ID=FC930656; Name=FC930656; organism=Citrus clementina; type=EST; length=759bpback to top |