FC930657

Overview
NameFC930657
Unique NameFC930657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930657_ssr178 microsatellite FC930657_ssr178:178..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15198 contig Ccv1_Contig15198:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+LLFEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG A+KYGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGM
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+LLFEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG A++YGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGM
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+LLFEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  +KYGDLR+LDTPIAENSFTGM IGAAMTGLRPIVEGM
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 62/80 (77.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E LL+EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL +KYG+LR+LDTPIAENSFTG+ IGAAMTGLRPI+EGM
Sbjct:    3 EKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:  451 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            H+L ++EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAAMTGL+P+VEGM
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGM 83          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            ++ +F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGM
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            ++ +F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGM
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  454 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            E+L+F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGLRPIVEGM
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1
Query:  457 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            + L+EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAAMTGLRPIVEGM
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGM 82          
BLAST of FC930657 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.251e-23
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  463 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 693
            LFEAL++ ++EEM+R+  V ++GED+GHYGGSYKVT+GL  KYG  RV+DTPIAE SF G  +GAA TGL P+VEGM
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGM 82          
The following BLAST results are available for this feature:
BLAST of FC930657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_STAPU1.662e-3588.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR8.248e-3586.25Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL4.526e-3385.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU5.532e-3177.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME1.610e-3077.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE4.684e-3077.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU3.036e-2976.25Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL8.833e-2976.25Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA3.356e-2875.95Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT3.251e-2364.94Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34009H05EF PostHarvC1 Citrus clementina cDNA clone C34009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930657 ID=FC930657; Name=FC930657; organism=Citrus clementina; type=EST; length=693bp
AGTGGCTTCAATTAAATCGCCGAAAACGAGAGCAACGTAAAGCAGCTCAT
AAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTCCAATATA
AATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTTTCAGTTA
ATAAGAAAAACCTCTCGCAGTTCGTCAAATCGAATCGAATCGAATCCAAT
GGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCACCGTCCA
ATTGCTTCGATTCTAAGAAGTTCCAGCTCTCAACTCGCAGATCTCTCTCA
GGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCGTCAACTT
AGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACTAATGCAG
TTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAAGCAAGGG
CACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAGAAAT
GGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCACTATG
GGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTC
AGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTATGGGCAT
TGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
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