FC930661

Overview
NameFC930661
Unique NameFC930661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11815 contig Ccv1_Contig11815:459..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 88/247 (35.63%), Postives = 127/247 (51.42%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL----------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P  +R   +++I  FW LGT+FE  LA  VMP L WRWLL LS++P     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+   +   D   I    +P                        TTLLLWF++F N+F YYG++LLT+EL          N  +A      L  E+      Y ++  T+L+E PGLL++  I+DRVGRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI--VSRQEDRGKIRDLFSPQFRC--------------------TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYL-TVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 86/252 (34.13%), Postives = 129/252 (51.19%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLV--SDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P   R   +++I  FW +GT+FE  LA  VMP L WRWLL LS+VP     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+    E      ++  P                            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFR------------------------WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 86/252 (34.13%), Postives = 129/252 (51.19%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLV--SDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P   R   +++I  FW +GT+FE  LA  VMP L WRWLL LS+VP     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+    E      ++  P                            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFR------------------------WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 86/252 (34.13%), Postives = 129/252 (51.19%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLV--SDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P   R   +++I  FW +GT+FE  LA  VMP L WRWLL LS+VP     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+    E      ++  P                            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFR------------------------WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 83/252 (32.94%), Postives = 125/252 (49.60%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLV--SDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P   R   +++I  FW +GT+FE  LA  VMP L WRWLL LS+ P     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+    E      ++  P                            TTLLLWF++F N+F YYG++LLT+EL              + EA+C      L        Y+++  T+L+E PG+L++  ++DR+GRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFR------------------------WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 83/252 (32.94%), Postives = 125/252 (49.60%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLV--SDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            + LRGLVG G+G  P  ++ + EF+P   R   +++I  FW +GT+FE  LA  VMP L WRWLL LS+ P     +L    PE+ +Y   +GN   A   L+++A  N   +P G L+    E      ++  P                            TTLLLWF++F N+F YYG++LLT+EL              + EA+C      L        Y+++  T+L+E PG+L++  ++DR+GRK
Sbjct:  177 LVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFR------------------------WTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRK 400          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 77/240 (32.08%), Postives = 120/240 (50.00%), Query Frame = 2
Query:   11 RGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARC------GSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 712
            RGL G G+G  P  ++ + EF+P + R   +V+I +FW +G +FEA LA+ VM    WR L+ LSS+P     +     PE+ ++   +G+   A   L+  A+ NR  LP+G LVS   A  +    I     LLS  + K                TT+LLW ++   +F YYG++L T+ L      C        T + +      S Y ++  T+LAE PGL+++ +I++  GRK
Sbjct:  179 RGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSSTKAGSESRGDIAN---LLSPDLRK----------------TTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRK 399          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 75/251 (29.88%), Postives = 122/251 (48.61%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLL---LEHAQDASL----------YVNVFITSLAELPGLLLSAVIVDRVGRKF 715
            + LR +VG G+ +         EFIPA  R  L+ + S FW +G+I    L   V+P + WRW++  S +PS  ++ L+   PE+ ++  +AGN+  A   L+++A+ N   LP G L   E       V       L+SS                   RT+LLLW+ +F  SF YYG +L +SEL  +   C +   L   ++H Q+ +L          Y  + I+ L E+  + L+ ++++ VGRK+
Sbjct:  158 IFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMNNGVLPEGELREPEVTERGNAV------TLISSAFR----------------RTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKY 386          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 60/196 (30.61%), Postives = 100/196 (51.02%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGS 589
            V LR +VG G+      L    EF+P   RG ++ +   FW  G++   ++A +V+P + WRWL+ ++S+P   +++ +   PE+ ++  + GN   A + LE +A+ NR+ +P G LV         E I+ +         +K              +RTTL +W ++ G SF YYGVIL ++EL   +  CGS
Sbjct:  141 VFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLV---------EPILEKRGRFADLLDSK-------------YLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGS 314          
BLAST of FC930661 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 59/196 (30.10%), Postives = 96/196 (48.98%), Query Frame = 2
Query:    2 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGNMADAAHVLEKMAQRNRTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKXXXXXXXXXXXXXXIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGS 589
            V LR +VG G+      L    EF+P   RG ++ +   FW  G++    LA +++P + WRWL+ ++S+P   +++ +   PE+ ++  + GN   A   LE++A+ NR+ +P G LV                 P+L                    +RTTL +W ++ G SF YYGVIL ++EL   +  CGS
Sbjct:  141 VFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVE----------------PVLEK------RGRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGS 314          
The following BLAST results are available for this feature:
BLAST of FC930661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SVOP_XENLA2.143e-3335.63Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_PONAB2.799e-3334.13Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN2.799e-3334.13Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN2.799e-3334.13Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_RAT2.369e-3232.94Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE3.095e-3232.94Synaptic vesicle 2-related protein OS=Mus musculus... [more]
YOU1_CAEEL1.030e-2732.08Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOPL_DANRE6.910e-2429.88Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_MOUSE5.850e-2330.61Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]
SVOPL_HUMAN4.952e-2230.10Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]

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Properties
Property NameValue
Genbank descriptionC34009H09EF PostHarvC1 Citrus clementina cDNA clone C34009H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930661 ID=FC930661; Name=FC930661; organism=Citrus clementina; type=EST; length=718bp
GGTTACTCTCCGTGGTTTAGTCGGTATTGGCCTAGGCAGTGGGCCTGTAT
GTTTATCCTGGTTTCTAGAGTTCATTCCTGCTTCAAATAGAGGCATGTTG
ATGGTTGTTATATCAACCTTCTGGACGCTAGGAACAATATTTGAGGCTGC
CCTTGCATGGATGGTGATGCCCAGATTGAATTGGAGATGGCTACTTGCTT
TGAGCTCTGTACCTTCATTTGCTGTGCTTCTACTTTACGGTCTTGCACCG
GAAACTCCAAAGTATCTATGTACTGCAGGTAACATGGCTGATGCTGCTCA
CGTTCTGGAGAAAATGGCTCAAAGGAACAGGACAAATCTCCCATCAGGAA
TGCTTGTTTCTGATGAAACTGCTACACCGGATGAAGAAGTTATTATACCA
GAACATACACCTCTCCTCTCTTCGACTGTAAATAAATCAGGATCCTCATC
TTTTCTCATGCTGTTGTCATCAGAATTAATCAGAACTACCCTTCTGTTAT
GGTTTCTCTTCTTTGGAAATTCATTCGTATATTATGGGGTTATATTGTTG
ACATCAGAATTAAATAGTGAGGAAGCCAGATGTGGCTCAACTCTCTTGCT
TTTGGAACATGCCCAGGATGCCAGCCTATACGTTAATGTATTTATCACTA
GCTTGGCAGAACTTCCCGGGCTTCTGTTATCAGCAGTGATTGTGGACAGA
GTTGGACGCAAGTTTCCA
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