FC930668
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49 Identity = 87/131 (66.41%), Postives = 110/131 (83.97%), Query Frame = 3 Query: 291 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683 MS+ K +SI IREVWNDNL+ E LIRD+VDD+PY+AMDTEFPGIV+R +G FKS+++Y+Y+ LK NV++LK+IQLGLTF++E GNLP GTDKYC+WQFNFREF D D++A DSI+LL +SGID KN Sbjct: 1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 2.994e-48 Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3 Query: 291 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTD-KYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683 MS+ K +SI IREVWNDNLE E +LIR++VDD+P++AMDTEFPGIV R +G FK+++EY+Y+ LK NV++LK+IQLGLTF+DE GNLP GTD KYC+WQFNFREF + D+YA DSI+LL +SGIDF KN Sbjct: 1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKN 132
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.903e-45 Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 3 Query: 306 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683 K +SI IREVW+ NL EF+LIR+IVD + YIAMDTEFPG+VL+ + FK +++ NY+ LK NVDLLKLIQ+GLTF+DENGNLP GTDK+C+WQFNFREF+ ED+YA +SI+LL + GIDFKKN Sbjct: 6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.173e-38 Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 3 Query: 306 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSI------GNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683 + ++I IREVWN NLE E +LI +DD+PY+AMDTEFPGIV +++ + EYNY LK NV++LKLIQLGLT +DE GNLP GT+K C+WQFNFREF+ D++A DSI+LL +S ID +KN Sbjct: 10 EDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKN 141
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32 Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 3 Query: 288 NMSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKY--CLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKR 689 N + P ++ REVW +NLE EF LI +I+DDYP+I+MDTEFPG++ +S F + + Y LK NVD L LIQ+GLT +D NGNLP G D + +W+FNFR+F D +A DSI+LL R GIDF++N R Sbjct: 7 NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCR 141
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31 Identity = 64/121 (52.89%), Postives = 91/121 (75.21%), Query Frame = 3 Query: 324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686 IR+VW+ NL+ E +LI +++ YP ++MDTEFPG+V R +G FKSS +Y+YQ L+ NVD LK+IQ+GL +DE GN P + C WQFNF F+ +D+YA +SI+LL++SGIDFKK++ Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKHQ 137
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30 Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 3 Query: 324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686 I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K++ Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHE 127
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30 Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 3 Query: 324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686 I EVW NLE E IR+IV Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G P G + WQFNF+ F+ ED+Y+ DSI LL+ SG+ F+K++ Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHE 127
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30 Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 3 Query: 309 SESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNF--KSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDK--YCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKR 689 S+ I IR+VW NLE EF LIR IV+DYP+I+MDTEFPG++ ++ + + + Y Y LK NVD L LIQ+GLT +D +GNLP G K +W+FNFR+F + D +A DSI+LL R GIDF++N+R Sbjct: 9 SDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRR 139
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30 Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 3 Query: 315 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686 S I EVW NL+ E IR ++ Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ NVDLLK+IQLGLTF +E G P GT WQFNF+ F+ ED+YA DSI+LL+ SGI FKK++ Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHE 127 The following BLAST results are available for this feature:
BLAST of FC930668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930668 ID=FC930668; Name=FC930668; organism=Citrus clementina; type=EST; length=705bpback to top |