FC930668

Overview
NameFC930668
Unique NameFC930668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 87/131 (66.41%), Postives = 110/131 (83.97%), Query Frame = 3
Query:  291 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683
            MS+  K +SI IREVWNDNL+ E  LIRD+VDD+PY+AMDTEFPGIV+R +G FKS+++Y+Y+ LK NV++LK+IQLGLTF++E GNLP  GTDKYC+WQFNFREF  D D++A DSI+LL +SGID  KN
Sbjct:    1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.994e-48
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:  291 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTD-KYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683
            MS+  K +SI IREVWNDNLE E +LIR++VDD+P++AMDTEFPGIV R +G FK+++EY+Y+ LK NV++LK+IQLGLTF+DE GNLP  GTD KYC+WQFNFREF  + D+YA DSI+LL +SGIDF KN
Sbjct:    1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKN 132          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.903e-45
Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 3
Query:  306 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683
            K +SI IREVW+ NL  EF+LIR+IVD + YIAMDTEFPG+VL+ +  FK +++ NY+ LK NVDLLKLIQ+GLTF+DENGNLP  GTDK+C+WQFNFREF+  ED+YA +SI+LL + GIDFKKN
Sbjct:    6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.173e-38
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 3
Query:  306 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSI------GNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKN 683
            + ++I IREVWN NLE E +LI   +DD+PY+AMDTEFPGIV +++        +    EYNY  LK NV++LKLIQLGLT +DE GNLP  GT+K C+WQFNFREF+   D++A DSI+LL +S ID +KN
Sbjct:   10 EDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKN 141          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  288 NMSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKY--CLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKR 689
            N  + P   ++  REVW +NLE EF LI +I+DDYP+I+MDTEFPG++ +S   F +  +  Y  LK NVD L LIQ+GLT +D NGNLP  G D +   +W+FNFR+F    D +A DSI+LL R GIDF++N R
Sbjct:    7 NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCR 141          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 64/121 (52.89%), Postives = 91/121 (75.21%), Query Frame = 3
Query:  324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686
            IR+VW+ NL+ E +LI  +++ YP ++MDTEFPG+V R +G FKSS +Y+YQ L+ NVD LK+IQ+GL  +DE GN P     + C WQFNF  F+  +D+YA +SI+LL++SGIDFKK++
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKHQ 137          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 3
Query:  324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686
            I EVW  NLE E   IR+IV  Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G  P  G +    WQFNF+ F+  ED+Y+ DSI LL+ SG+ F+K++
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHE 127          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 3
Query:  324 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686
            I EVW  NLE E   IR+IV  Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G  P  G +    WQFNF+ F+  ED+Y+ DSI LL+ SG+ F+K++
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHE 127          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 3
Query:  309 SESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNF--KSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDK--YCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNKR 689
            S+ I IR+VW  NLE EF LIR IV+DYP+I+MDTEFPG++ ++  +   + +  Y Y  LK NVD L LIQ+GLT +D +GNLP  G  K    +W+FNFR+F  + D +A DSI+LL R GIDF++N+R
Sbjct:    9 SDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRR 139          
BLAST of FC930668 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  315 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKYGTDKYCLWQFNFREFSPDEDVYAYDSIKLLSRSGIDFKKNK 686
            S  I EVW  NL+ E   IR ++  Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ NVDLLK+IQLGLTF +E G  P  GT     WQFNF+ F+  ED+YA DSI+LL+ SGI FKK++
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHE 127          
The following BLAST results are available for this feature:
BLAST of FC930668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CAF1F_ARATH1.588e-4966.41Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1G_ARATH2.994e-4866.67Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH6.903e-4566.67Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH8.173e-3856.06Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1I_ARATH3.929e-3250.74Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1_SCHPO1.143e-3152.89Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT8_MOUSE2.156e-3057.85CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN2.156e-3057.85CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CAF1K_ARATH2.816e-3051.91Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CNOT7_MOUSE4.803e-3055.65CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC34010A04EF PostHarvC1 Citrus clementina cDNA clone C34010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930668 ID=FC930668; Name=FC930668; organism=Citrus clementina; type=EST; length=705bp
GGGGGAGGTTTCTAACAGCTTTGGTCCGAAAAGCTCCTTCCTCAGTCTTT
CCTTTTATAGAAAATTAAAAAAATAAACCCCAAAAATAAACTTTCCTTTG
ACTCTCAATAACGATAAACCCCGCTTGTTTCTTGAGATAATTTCAGATTT
TTCCCGAGGAAGAACCCCCCGAAAGTACCATTAACGCGGACAGTTCTCCA
ATCCAGCAATTTCCTATCTCCTAAAATTTAAGGTTTTGGGTTTTTATCAG
CTTATGAATTACTTGTGTCTTGTGAGGATAAGAAAGTAATATGTCGATTT
TGCCAAAAAGCGAATCGATTCATATTCGGGAAGTATGGAATGATAATCTT
GAGCATGAATTTAGTTTAATTCGGGATATCGTCGATGATTACCCTTACAT
TGCCATGGACACTGAGTTCCCAGGTATCGTTTTACGTTCAATAGGGAATT
TCAAGAGTAGCTCTGAGTATAATTACCAAAACTTGAAAGTCAATGTCGAT
CTCTTGAAGTTAATTCAGTTAGGCCTTACATTTACTGACGAGAATGGGAA
TTTACCCAAGTACGGGACTGATAAGTACTGTCTGTGGCAATTCAATTTTC
GTGAGTTCAGCCCTGATGAAGATGTGTATGCTTATGATTCTATTAAACTG
TTATCCCGAAGTGGCATTGATTTTAAGAAGAACAAGAGAAGGGTGNTGAT
GCTAT
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