FC930670

Overview
NameFC930670
Unique NameFC930670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:4..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930670 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.994e-79
Identity = 142/216 (65.74%), Postives = 178/216 (82.41%), Query Frame = 3
Query:   75 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGG*VLTVFVCSIFAAAFSG 722
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSAKGKVLMRA+YG  V T+++  +FAAAFSG
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSG 216          
BLAST of FC930670 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.618e-60
Identity = 124/220 (56.36%), Postives = 148/220 (67.27%), Query Frame = 3
Query:   75 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGG*VLTVFVCSIFAAAFSG 722
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+YG   +TVFVCSIF A  SG
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSG 220          
BLAST of FC930670 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.344e-59
Identity = 124/220 (56.36%), Postives = 148/220 (67.27%), Query Frame = 3
Query:   75 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGG*VLTVFVCSIFAAAFSG 722
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+YG   +TVFVCSIF A  SG
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSG 220          
The following BLAST results are available for this feature:
BLAST of FC930670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH1.994e-7965.74Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI4.618e-6056.36UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ1.344e-5956.36UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34010A06EF PostHarvC1 Citrus clementina cDNA clone C34010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930670 ID=FC930670; Name=FC930670; organism=Citrus clementina; type=EST; length=723bp
GACGCAATAGTGTCTCTAACGCGTCTGCGAAATTTCCTAAGATTTTCGAG
TACTGATTTCGCAAATCCATCAAAATGAGTCGCCCCCAGGATCCACACCG
TCCTTTCTTCCCATTTGGAAATCCTTTTCGGATGATGTCCCCCAAAGGTT
CTCGTTTGTCTCCCAAGCTTGTATCTCTGTTGGCTGATTTTGAGGAGACC
TTGGCAGAGAGGCTGAGAAAACTTATGCCGAAAGACAAGGATGATATCCT
CAACTTATCATGGATGAGACTGGCAATGGAGTCACTTTGTGAGACTCACA
ATGTCATAAAAGACCTTATAACTGAGTTGGAGCTTCCTGTAAGTGACTGG
GATGAGAAATGGATAGACGTGTACTTAGACATCAGTGTAAACTTGCTTGA
TATATGCATTGCTTTTAGCTCTGTTCTCACGAAGGTCAGCCAAGGCCACC
TATTGCTTCAGTGTGTCTTGCACACTTTGGATTCTTCCTCTCCAACACAG
TTTGGGCGAGCCTGTTCTTCTCTTGATAACTGGAGGGAGCACATTAGTTC
AAAGAACCCCAGAGTTGAGAGCTGTCGTTCAATCTTAGACAATCTGGTAG
CTTCTTTGGATTTGCCCAAGGTTAAGAACTCAGCCAAAGGGAAGGTTTTG
ATGCGCGCAATGTATGGGGGTTAGGTGTTGACTGTATTTGTTTGTAGTAT
TTTTGCTGCAGCCTTCTCTGGAT
back to top