FC930692

Overview
NameFC930692
Unique NameFC930692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15107 contig Ccv1_Contig15107:264..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2539_RAT (Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 73/230 (31.74%), Postives = 105/230 (45.65%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYF-GPRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            + + PLDV K RLQ+Q   VA      +    ++Y   P T+ +  +C   C   GV   + +CP          D  ++ GTLD F KI+R EG   LW G  A L + VP   IY   YD  + +L       + ++  Y P+VAG+LAR        P+EL RT++QA   +         ++ L   +    +         G+R LW G G    RDVPFSA+ W
Sbjct:   27 LFMTPLDVVKVRLQSQRPTVASELTTPSRFWSLSYTKSPSTLQSPGKCLLYCN--GVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFL----CGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVS---------YRELAACVQAAVAQG-------GWRSLWLGWGPTALRDVPFSALYW 234          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2539_HUMAN (Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 74/230 (32.17%), Postives = 104/230 (45.22%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFG-PRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            + + PLDV K RLQ+Q   +A     S+ +  ++Y   P ++ +  +C   C   GV   + +CP          D  ++ GT+D F KI+R EG   LW G  A L + VP   IY   YD  + +L       A ++  Y P+VAG+LAR        P+EL RT++QA            V    LG                G+R LW G G    RDVPFSA+ W
Sbjct:   27 LFMTPLDVVKVRLQSQRPSMASELMPSSRLWSLSYTKLPSSLQSTGKCLLYCN--GVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFL----CGRALTSDLYAPMVAGALARLGTVTVISPLELMRTKLQA----------QHVSYRELGACVRTAVAQG------GWRSLWLGWGPTALRDVPFSALYW 234          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2539_BOVIN (Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 76/230 (33.04%), Postives = 108/230 (46.96%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYS-HPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            + + PLDV K RLQ+Q   VA    P S L S      P ++ +  +C   C   GV   + +CP          D  ++ GT+D F KI+R EG   LW G  A L + VP    Y   YD  + +L       A ++  Y P+VAG+LAR        P+EL RT++QA     +  +  G         + V++   + +G  G+R LW G G    RDVPFSA+ W
Sbjct:   27 LFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKLPSSLRSTGKCLLYCN--GVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAAYFTAYDQLKAFL----CGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQA---QHLSYRELG---------TCVRAA--VAQG--GWRSLWLGWGPTALRDVPFSALYW 234          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2539_MOUSE (Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 70/232 (30.17%), Postives = 103/232 (44.40%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYF-GPRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQ--GYRILWTGMGTQLARDVPFSAICW 710
            + + PLDV K RLQ+Q           +    ++Y      + +  +C   C   GV   + +CP          D  ++ GTLD F KI+R EG   LW G  A L + VP   IY   YD  + +L       + ++  Y P+VAG+LAR        P+EL RT++QA                    +S+ +  +++Q      G+R LW G G    RDVPFSA+ W
Sbjct:   27 LFMTPLDVVKVRLQSQRPSATSELTTPSRFWSLSYTKSSSALQSPGKCLLYCN--GVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFL----CGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQH------------------VSYRELASSVQAAVTQGGWRSLWLGWGPTALRDVPFSALYW 234          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2540_HUMAN (Solute carrier family 25 member 40 OS=Homo sapiens GN=SLC25A40 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18
Identity = 76/222 (34.23%), Postives = 96/222 (43.24%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQK--GFQGYRILWTGMGTQLARDVPFSAICW 710
            +IV PLDV K RLQAQ          +N + +   F       D  C   C   G    +    P  FQ  GTLD F+KIIR EG   LW G    L +AVP   IY  CYD     L     +N       +P+VAG +AR  A     P+EL RT+MQ+ K                   S+V+    + K     G+  LW G    + RDVPFSA+ W
Sbjct:   31 VIVTPLDVVKIRLQAQ----------NNPLPKGKCFVYSNGLMDHLC--VCEEGG--NKLWYKKPGNFQ--GTLDAFFKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLSALLRSKLGENETC----IPIVAGIVARFGAVTVISPLELIRTKMQSKK------------------FSYVELHRFVSKKVSEDGWISLWRGWAPTVLRDVPFSAMYW 214          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2539_DANRE (Solute carrier family 25 member 39 OS=Danio rerio GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 74/228 (32.46%), Postives = 99/228 (43.42%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQA-----AGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCP---PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            + V PLDV K RLQAQ      A  A S P   +        P      L C+       V   +S C         + GTLD F KI   EG   LW G    L +AVP   IY  CYD  R++L  +   +      ++PL+AG LAR  A +   P+EL RT+MQ+ +            + ++ + S V           G+  LW G G  + RDVPFSA+ W
Sbjct:   31 LFVTPLDVVKIRLQAQQTPLFQAIAAESRPWFRVTR------PSKWKCFLYCNGLMDHVYVCQNMSSCSNLYKTSTHFSGTLDAFVKITHNEGLRSLWSGLPPTLVMAVPATVIYFTCYDQLRDFLCYSMGYHG----DHIPLIAGGLARLGAVSVISPLELVRTKMQSRRLQYS--------ELMVCIRSSVAQ--------DGWLSLWRGWGPTVLRDVPFSALYW 232          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2540_XENTR (Solute carrier family 25 member 40 OS=Xenopus tropicalis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 74/220 (33.64%), Postives = 95/220 (43.18%), Query Frame = 3
Query:   57 VNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGF--QGYRILWTGMGTQLARDVPFSAICW 710
            V PLDV K RLQAQ              S+    G   ++ +      C     +G      P  F  RGT D F +IIR EG   LW G    L +AVP   IY  CYD  R+ L  +  + A  A+    LVAG+ AR  +     P+EL RT+MQ         +P          LS+ +    IQ      G+  LW G G  + RDVPFSA+ W
Sbjct:   34 VTPLDVVKIRLQAQ--------------SKPFIKGKCFVYCNGLMDHLCLCTNGNGKAWYRAPGHF--RGTTDAFVQIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLRDILIRSMPERAEIAS----LVAGATARLWSATLISPLELIRTKMQ--------YRP----------LSYKELRQCIQSSVAKDGWLALWKGWGPTVLRDVPFSALYW 215          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2540_DICDI (Mitochondrial substrate carrier family protein H OS=Dictyostelium discoideum GN=mcfH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 72/237 (30.38%), Postives = 96/237 (40.51%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQ------AFKGN----------QIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICWS 713
            +IV PLDV KTRLQ Q  G              ++   + +F                            +GTLD F KI + EG    WRG    L + +P+  IY   Y+  + +L +  D  A +    VPLVAG+LAR  + +   P EL RT  Q      A+K             IG  P    Q       +    NN+     G + LW G+G  L RDVPFSAI W+
Sbjct:   47 LIVTPLDVVKTRLQTQNTG--------------SHINQKHVF----------------------------KGTLDAFKKIYKNEGPLTFWRGVTPSLLMTIPSATIYFTSYEYLKEYLYQFNDTEAYNIYT-VPLVAGTLARIFSASVTSPFELLRTNSQGIVLQNAYKNTVAMAASSSTATIGTIPLSSEQRFNSFKLYRDIVNNV-----GIKGLWRGLGPTLVRDVPFSAIYWA 235          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2540_DANRE (Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 74/226 (32.74%), Postives = 96/226 (42.48%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVH------GTVSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            ++V PLDV K RLQAQ                      +  F   +C   C     H      G   +       + GTLD F KIIR EG   LW G    L +AVP   IY  CYD     L+      +  A    PL AG++AR  +     P+EL RT+MQ+ K  Q  ++   V      + S +K+        +G R LW G G  L RDVPFSA+ W
Sbjct:   32 LLVTPLDVVKIRLQAQ----------------------KNPFPKGKCFVYCNGLMDHICVCENGNTKVWYKAPGHFSGTLDAFLKIIRMEGIRSLWSGLPPTLIMAVPATVIYFTCYDQLFALLKLKMGDRSDLA----PLFAGAIARVGSATVISPLELIRTKMQSEK--QSYREMSAV------IRSALKN--------EGLRSLWRGWGPTLLRDVPFSAMYW 215          
BLAST of FC930692 vs. ExPASy Swiss-Prot
Match: S2540_BOVIN (Solute carrier family 25 member 40 OS=Bos taurus GN=SLC25A40 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 74/220 (33.64%), Postives = 94/220 (42.73%), Query Frame = 3
Query:   51 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCPPDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSLARSLACATCYPIELARTRMQAFKGNQIGKKPPGVWQTLLGVLSHVKSTNNIQKGFQGYRILWTGMGTQLARDVPFSAICW 710
            ++V P DV K RLQAQ          +N   +   F       D  C   C   G         P  FQ  GTLD F KIIR EG   LW G    L +AVP   IY  CYD     L     +N       +P+VAG +AR  A     P+EL RT+MQ+ K +         ++ L   +S   S +       G+  LW G    + RDVPFSA+ W
Sbjct:   31 LMVTPFDVVKIRLQAQ----------NNPFPKGKCFLYSNGLMDHLCV--CEEEGNKAWYKK--PGHFQ--GTLDAFLKIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLTALLRSKLGENESR----IPIVAGIVARLGAVTVISPLELIRTKMQSKKFS---------YEELHRFVSKKVSED-------GWISLWRGWAPTILRDVPFSAMYW 214          
The following BLAST results are available for this feature:
BLAST of FC930692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S2539_RAT2.064e-2031.74Solute carrier family 25 member 39 OS=Rattus norve... [more]
S2539_HUMAN3.520e-2032.17Solute carrier family 25 member 39 OS=Homo sapiens... [more]
S2539_BOVIN1.024e-1933.04Solute carrier family 25 member 39 OS=Bos taurus G... [more]
S2539_MOUSE5.084e-1930.17Solute carrier family 25 member 39 OS=Mus musculus... [more]
S2540_HUMAN1.132e-1834.23Solute carrier family 25 member 40 OS=Homo sapiens... [more]
S2539_DANRE1.932e-1832.46Solute carrier family 25 member 39 OS=Danio rerio ... [more]
S2540_XENTR1.635e-1733.64Solute carrier family 25 member 40 OS=Xenopus trop... [more]
S2540_DICDI2.136e-1730.38Mitochondrial substrate carrier family protein H O... [more]
S2540_DANRE2.789e-1732.74Solute carrier family 25 member 40 OS=Danio rerio ... [more]
S2540_BOVIN1.060e-1633.64Solute carrier family 25 member 40 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC34010C06EF PostHarvC1 Citrus clementina cDNA clone C34010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930692 ID=FC930692; Name=FC930692; organism=Citrus clementina; type=EST; length=717bp
GGTTAGGAGAGAGAGCTTTTTCCGCCGCTGGTGCTGCGTTTTTGTCGGCT
ATCATCGTCAATCCTCTTGACGTTGCCAAGACAAGGTTGCAAGCACAAGC
TGCTGGAGTAGCTTACTCACATCCGTTAAGCAATCTTATTAGTCGTATGG
CCTATTTTGGGCCTAGAACAATGTTTGCAGATTTAAGGTGTTCTCCGTCC
TGTACACGTGCTGGAGTTCATGGTACTGTGTCAATGTGTCCTCCTGATTG
TTTTCAGTACAGAGGAACACTTGATGTCTTTTACAAAATCATACGGCAGG
AAGGATTTTCCAGGCTGTGGAGAGGCACAAATGCTGGTTTGGCATTGGCT
GTACCAACGGTGGGAATCTACCTACCTTGCTATGACGTGTTCCGCAACTG
GTTAGAAGAGGCAACCGATAAGAATGCTCCAAGTGCGACACCATATGTCC
CTTTGGTTGCAGGATCATTGGCACGATCATTGGCTTGTGCAACTTGCTAC
CCCATTGAACTTGCCAGAACCCGGATGCAGGCATTCAAGGGTAATCAAAT
TGGCAAGAAGCCTCCTGGTGTCTGGCAGACGTTATTGGGTGTACTGTCCC
ATGTTAAAAGCACAAATAACATTCAAAAAGGCTTCCAAGGCTACCGCATA
CTGTGGACGGGCATGGGAACGCAGCTTGCTCGAGATGTTCCTTTCTCAGC
AATTTGTTGGTCAACTC
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