FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.993e-64
Identity = 121/139 (87.05%), Postives = 134/139 (96.40%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTE VRRRPYSV+LFDEVEKAH++VFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL+GM+GK +M+VARD V+QEVR+HFRPELLNRLDEIV+FDPLSHEQL++  RLQMKDVA+RLAERGVALAVTDA
Sbjct:  663 QLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDA 801          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 2.603e-64
Identity = 121/139 (87.05%), Postives = 134/139 (96.40%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY V+LFDEVEKAH++VFNTLLQVLDDGRLTDGQGRTVDFRN+VIIMTSNLGAEHLL+G+ GKVTM+VARD V++EVRKHFRPELLNRLDEIVVFDPLSH+QL++  RLQMKDVA+RLAERGVALAVTDA
Sbjct:  662 QLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNSVIIMTSNLGAEHLLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTDA 800          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 88/140 (62.86%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRR+PYSVVLFDE+EKAH  VFNTLLQ+LDDGR+TD QGRTVDFRNTVIIMTSN+G+EHLL G   +  ++  AR  V+ E+R HFRPE LNR+D+IV+F PL   Q++    LQ  ++  RLAER + + +TDA
Sbjct:  669 QLTEAVRRKPYSVVLFDEIEKAHTDVFNTLLQILDDGRITDAQGRTVDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDA 808          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.777e-42
Identity = 84/139 (60.43%), Postives = 109/139 (78.42%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQ+LDDGRLTD  GRTVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+++   +Q+  +  RLAE+ ++L +T+A
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEA 789          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.777e-42
Identity = 84/139 (60.43%), Postives = 109/139 (78.42%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQ+LDDGRLTD  GRTVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+++   +Q+  +  RLAE+ ++L +T+A
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEA 789          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.064e-41
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVT 412
            QLTEAVRRRPYSV+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVII+TSN+G+  +  G+    + +  R++V   +++HFRPE LNRLDEIVVF PL+ EQ+    ++Q++ V  RLAER + L ++
Sbjct:  651 QLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELS 787          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRRRPY+VVL DEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++++TSNLG+++L+    G+      + QVL+ VR  F+PE LNRLD++VVF  LS E+L    RLQ+  +A RLAER + L VTD
Sbjct:  665 QLTEAVRRRPYTVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLVDPTTGEAE---KKQQVLEVVRSSFKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTD 799          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.471e-40
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +       +  Q  + +V+  V KHFRPE LNR+DEIVVF PL  E +K    +Q++ +A RL E+G  L V+D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FATLDYQGIKSEVMDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSD 797          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.839e-40
Identity = 79/139 (56.83%), Postives = 105/139 (75.54%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QL+EAVRRRPYSVVL DEVEKAH+ VFN LLQVLDDGR+TD QGR VDFRNT+I+MTSN+G++H+LS           + QVLQ +RKHFRPE LNR+D++++F  L  ++L+    LQ+K +   L E+ + L+++DA
Sbjct:  676 QLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSDHILSLSADDADYDKMQKQVLQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDA 814          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.626e-40
Identity = 83/137 (60.58%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +       +  Q  ++QV++ V KHFRPE LNR+DE VVF PLS + +K    +Q+  +A R+ E G  L V+D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSD 797          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
HS101_ORYSJ1.993e-6487.05Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
HS101_ARATH2.603e-6487.05Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPB2_STRAW4.320e-4362.86Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_THET84.777e-4260.43Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET24.777e-4260.43Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_MEIRU1.064e-4161.31Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_STRCO5.281e-4162.32Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_VIBPA4.471e-4061.31Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB1_SYNY35.839e-4056.83Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_VIBVY7.626e-4060.58Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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