FC930710

Overview
NameFC930710
Unique NameFC930710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930710_ssr174 microsatellite FC930710_ssr174:174..183. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930710_ssr120 microsatellite FC930710_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6419 contig Ccv1_Contig6419:88..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 8.600e-66
Identity = 115/145 (79.31%), Postives = 131/145 (90.34%), Query Frame = 2
Query:  233 RRSSVNRGY-STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            R +SVNR + ST   TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CPEE
Sbjct:   82 RIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEE 226          

HSP 2 Score: 29.261 bits (64), Expect = 8.600e-66
Identity = 14/22 (63.64%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   RL  AGPPSPA HLR  F
Sbjct:  224 PEEGRLPDAGPPSPATHLREVF 245          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.215e-62
Identity = 109/147 (74.15%), Postives = 125/147 (85.03%), Query Frame = 2
Query:  224 ISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCPEE
Sbjct:   59 VLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEE 205          

HSP 2 Score: 30.0314 bits (66), Expect = 3.215e-62
Identity = 14/22 (63.64%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   RL  AGPPSPA+HLR  F
Sbjct:  203 PEEGRLPDAGPPSPADHLRDVF 224          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.578e-61
Identity = 107/135 (79.26%), Postives = 119/135 (88.15%), Query Frame = 2
Query:  269 PTTKCAASDPD---QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            P +  AA+  D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP E
Sbjct:   28 PASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCPPE 162          

HSP 2 Score: 33.8834 bits (76), Expect = 4.578e-61
Identity = 16/22 (72.73%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   RL AAGPPSPAEHLR  F
Sbjct:  160 PPEGRLPAAGPPSPAEHLREVF 181          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 2.922e-60
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  284 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP E
Sbjct:   84 AASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPE 210          

HSP 2 Score: 24.6386 bits (52), Expect = 2.922e-60
Identity = 12/22 (54.55%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   RL  AGP  PA+HLR  F
Sbjct:  208 PPEGRLPDAGPRVPADHLREVF 229          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.876e-59
Identity = 105/135 (77.78%), Postives = 118/135 (87.41%), Query Frame = 2
Query:  260 STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            S    +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP E
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPE 211          

HSP 2 Score: 25.409 bits (54), Expect = 1.876e-59
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   +L  AGP +PA+HLR  F
Sbjct:  209 PPEGKLPDAGPSAPADHLRKVF 230          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.172e-52
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 2
Query:  251 RGYSTVPTTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            R  S+  +   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP E
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECPPE 173          

HSP 2 Score: 31.187 bits (69), Expect = 1.172e-52
Identity = 15/22 (68.18%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  655 P*RRRLSAAGPPSPAEHLRMSF 720
            P   RL AA PPSPAEHLR  F
Sbjct:  171 PPEGRLPAADPPSPAEHLREVF 192          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  302 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVS-GPEQ 652
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S  PE+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  302 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVS-GPEQ 652
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S  PE+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  302 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEE 664
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S    CP E
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS---VCPRE 126          
BLAST of FC930710 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  302 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPE 649
            +++  R D+R L+ S  C PI++RL WHDAGTYD       + GGAN S+RF+ EL    N GL  A+   + +K K+  V+YADL+QLA   A+E  GGP IP   GR D    +
Sbjct:   12 EIEKTRRDLRALISSRNCAPIMLRLAWHDAGTYDAK----KKTGGANGSIRFKEELNRPHNKGLEKAVAFCEEVKAKHPRVSYADLYQLAGVVAVEVTGGPAIPFTPGRKDADSAD 123          
The following BLAST results are available for this feature:
BLAST of FC930710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
APXS_ARATH8.600e-6679.31L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APXT_ARATH3.215e-6274.15L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX6_ORYSJ4.578e-6179.26Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APX8_ORYSJ2.922e-6083.46Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APX7_ORYSJ1.876e-5977.78Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX5_ORYSJ1.172e-5269.78Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ1.117e-2449.15Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI2.489e-2448.31Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ3.251e-2448.76Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX5_ARATH6.778e-2243.97L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34010E01EF PostHarvC1 Citrus clementina cDNA clone C34010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930710 ID=FC930710; Name=FC930710; organism=Citrus clementina; type=EST; length=737bp
GATGGCAGCTCGGCCAGCGTCACTGACACAACAACAGATACGACTGCAAT
CAAAATCACAATCACCGATGGCTTCCTCTTTGAGCACCGCCGCTTCTTCT
CGCCTTCTTTGCTCCACCACCGCCGCCGCCGCAGCTGCTAAGCTTTCTTT
CTCTTCCGCTTCTTCACTCTCTTTCTCTCTCTCCTCTTCTTCCTCCCTCA
AATGCCTCAGATTCTCTCCTCTCATCAGCCAGAGGAGATCGTCTGTGAAC
AGAGGATATAGCACCGTACCTACGACGAAATGTGCGGCGTCGGATCCTGA
TCAGTTGAAGAGTGCTAGAGAAGATATTAGGGAGCTTCTCAAGTCTACAT
TTTGCCATCCTATTTTGGTTCGTCTAGGATGGCATGATGCTGGTACTTAT
GACAAGAACATTGAGGAGTGGCCTCGAAGGGGAGGAGCTAATGCAAGTCT
TAGATTTGAGGTTGAGCTAAAACACGCAGCCAATGCTGGGCTTGTGAATG
CATTGAAACTGATTCAACCTATCAAGGACAAATATTCCGGTGTCACATAT
GCAGACTTATTCCAGTTGGCTAGCGCTACTGCTATAGAGGAAGCCGGGGG
TCCTAAGATCCCAATGAAGTATGGAAGAGTGGATGTCTCAGGACCTGAGC
AGTGCCCTGAAGAAGGAGGCTTTCTGCTGCTGGGCCTCCATCACCTGCTG
AACATTTAAGAATGTCTTTTATAGAATGGGATTAAAT
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