FC930711

Overview
NameFC930711
Unique NameFC930711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig197 contig Ccv1_Contig197:342..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.108e-66
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYR-PILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALFR 711
            TT AQ GVCYG LG+NLP+  +V+ALYNQ NIRRMR+Y P+ EVLEALRGSNIE+LL +PND L+ +AS+Q  AN WVQDNI+N+ NNV+F+Y++VGNE KP  +FAQ+LVPA+ NIQ AI+ A LG+Q+KVSTAI+ GAL  S PPS GSFK  YR   LD VI FL  N +PL+VN+Y YFA   + + ISLDYALFR
Sbjct:   29 TTDAQSGVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEVKPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFR 228          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.225e-65
Identity = 128/197 (64.97%), Postives = 153/197 (77.66%), Query Frame = 1
Query:  121 TSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQ-ISLDYALF 708
            T A IGVC GM+GD+LP + +V+ALY  NNI RMRLYDPN   LEALRGSNI++LLG+PN+ LQ IA +QA AN WVQ+N++N+ N VKFKYIAVGNE KP D+FAQ+LVPAMRNIQ AI+ A L  +IKVSTAI+ G L  + PPS GSFK  Y  +L P+I FL  ++SPLLVNLYPYFA  G+ Q I LDYALF
Sbjct:   36 TGAPIGVCNGMVGDDLPPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVRNYAN-VKFKYIAVGNEVKPSDSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALF 231          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.122e-61
Identity = 119/201 (59.20%), Postives = 153/201 (76.12%), Query Frame = 1
Query:  115 DTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQY---LVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALF 708
            D T AQ GVCYG  G+ LPS  DV++L N+NNIRRMR+YDP++  LEALRGSNIE++LG+PN  L+ +A++QA A+TWVQ+N++N+  NVKF+YIAVGNE  P +  ++Y   L+ AMRNIQ AI+GA LG+QIKVSTAIE G    +SPPS G FK   R  ++P+I FL  N++PLLVNLYPYFAI  +  I L+YALF
Sbjct:   20 DFTGAQAGVCYGRQGNGLPSPADVVSLCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNVRNY-GNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDVRQFIEPIINFLVTNRAPLLVNLYPYFAIANNADIKLEYALF 219          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.039e-56
Identity = 111/196 (56.63%), Postives = 141/196 (71.94%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            +GVCYGMLG+NLP    V+ LY   NIRRMRLYDPN+  L+ALRGSNIEV+LG+PN  LQ IA+N + AN WVQ N++NF   VKF+YIAVGNE  P     +  +YL+PAMRNI+NAI+ A L + IKVS++++   +  S PPS GSF+   R  +DP+I F+    SPLLVN+YPYF+  G+ R ISL YALF
Sbjct:   33 VGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDVRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF 228          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.448e-55
Identity = 112/201 (55.72%), Postives = 144/201 (71.64%), Query Frame = 1
Query:  121 TSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAID-GDRQISLDYALF 708
            T AQ+GVCYGM G+NLP   +VIALY ++NI RMR+YDPN+ VLEALRGSNIE++LG+PN  LQ + +N + A +WVQ N++ F ++V F+YIAVGNE  P +      AQ+++PAMRNI +AI  A L  QIKVSTAI+   +  S PPSAG+F+   R  LDP+I FL+  +SPLL N+YPYF      R ISL YALF
Sbjct:   34 TDAQVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALF 233          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.830e-54
Identity = 109/197 (55.33%), Postives = 144/197 (73.10%), Query Frame = 1
Query:  121 TSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            T+ QIGVCYGMLGD LPS  DV+ALY Q NI+RMRLY P+   L ALRGS+IE++L +P+  L+ +AS+Q EA+ WVQ+N+Q++ + V+F+YI VGNE KP  +   +L+ AM+NI+NA++GA  G ++KVSTAI       +SPPS G F+  Y+  L+PVI FL   +SPLLVNLYPYF+  GD   I LDYALF
Sbjct:   28 TAGQIGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKP--SVGGFLLQAMQNIENAVSGA--GLEVKVSTAIATDTTTDTSPPSQGRFRDEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALF 220          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.305e-54
Identity = 110/200 (55.00%), Postives = 138/200 (69.00%), Query Frame = 1
Query:  121 TSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            T AQIGVCYGM+G+NLPS  +VI LY   NIRR+RLYDPN   L ALRGSNIEV+LGLPN  ++ I+S    A  WVQ N+++F  +VK KYIAVGNE  P     N A + VPA+ NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL YALF
Sbjct:   23 TEAQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.305e-54
Identity = 112/201 (55.72%), Postives = 139/201 (69.15%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            TT AQIG+CYGM+G+NLP   +VIALY  NNI+RMRLYDPN+  L ALR S IE++LG+PN  LQ +A+NQ  A  WVQ N+ NF  +VK KYIAVGNE  P  G ++ AQY++PA +N+  AI    L  QIKV+TAI+   +  S PPS GSF+   R  LDP I +L    +PLLVN+YPYF+ I   R ISL YALF
Sbjct:   29 TTDAQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYALF 229          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.028e-52
Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  130 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            QIGVCYGM+G+NLPS  +VI LY  NNIRRMRLYDPN+  L+ALR S IE++LG+PN  LQ +A+N   A  WVQ N+ NF  +VK KYIAVGNE  P      +AQY++PA++N+  A+    L  QIKVSTAI+   +  S PPS GSF+   R  LDP+I +L    +PL VN+YPYF+  G+ R ISL YALF
Sbjct:    1 QIGVCYGMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALF 197          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.028e-52
Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query:  121 TSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            T AQ+GVCYGM+G+NLPS  +VI LY   NI R+RLYDPN+  L ALRGSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL YALF
Sbjct:   23 TEAQLGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
The following BLAST results are available for this feature:
BLAST of FC930711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E13A_SOYBN1.108e-6664.00Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13B_PRUPE1.225e-6564.97Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13H_TOBAC3.122e-6159.20Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
GUB_NICPL1.039e-5656.63Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13B_HEVBR7.448e-5555.72Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_ARATH2.830e-5455.33Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_SOLLC6.305e-5455.00Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13B_PEA6.305e-5455.72Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13B_PHAVU2.028e-5254.82Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E132_SOLTU2.028e-5253.00Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34010E02EF PostHarvC1 Citrus clementina cDNA clone C34010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930711 ID=FC930711; Name=FC930711; organism=Citrus clementina; type=EST; length=711bp
GATCCCACTTTTCCATTTGCATTTTTCTCCCTGGCTAAATTCTTATCCTC
CCTCAATACCCCTCCAATGGTTTCCGTCGTCTTGCTACTTCTTGGCCTGC
TAGTGGCTACTCTAGACACTACAAGTGCTCAAATAGGTGTTTGTTATGGA
ATGCTTGGTGACAACTTACCATCAAAACCAGATGTCATAGCTCTCTACAA
CCAAAACAACATCAGAAGAATGAGACTCTATGATCCAAACAAAGAAGTTC
TAGAAGCTCTCCGTGGCTCCAACATTGAAGTTTTGCTAGGCCTTCCCAAC
GATAAGCTCCAGATAATCGCTTCCAATCAAGCCGAAGCGAACACTTGGGT
CCAAGACAACATCCAAAATTTTGTTAACAATGTCAAGTTCAAATACATCG
CTGTAGGAAATGAAGCAAAACCAGGAGACAACTTCGCTCAGTATCTTGTT
CCCGCCATGAGAAACATACAAAATGCCATTAACGGAGCTAACCTTGGAAG
CCAAATCAAAGTTTCCACTGCCATTGAATTCGGAGCTCTTGAAGTATCCT
CTCCGCCGTCAGCAGGCTCCTTTAAGCAAGCTTACAGACCAATTCTTGAT
CCCGTCATTACCTTCCTCAACGAAAACAAATCCCCGTTGCTTGTTAACTT
GTACCCTTACTTCGCAATTGATGGCGACCGTCAAATATCTCTTGATTATG
CACTGTTTCGG
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