FC930712

Overview
NameFC930712
Unique NameFC930712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14113 contig Ccv1_Contig14113:44..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_DANRE (Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio GN=dpyd PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.367e-32
Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  201 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            D+S+ + G++ PNPF + S PP T+  +++RAF++GWG  + KT  LD   V NV+PR  R      G+  G I G     + NIELIS++      K   +LKA +P  I+IASIM  YN+A W EL    +E+  DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  532 DISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTNVSPRIVR------GTTSGHIFGPGQGSFLNIELISEKTAAYWCKSVAELKADFPKNIIIASIMCSYNQADWTELAKMAQESQADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_MOUSE (Dihydropyrimidine dehydrogenase [NADP+] OS=Mus musculus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 76/166 (45.78%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  201 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK+ W EL    E +G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_CAEEL (Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis elegans GN=dpyd-1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  195 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEE 689
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P +I+IASIM  YNKA W EL  + EE G D +E+N SCPHGM E+ MG A GQ   +++E
Sbjct:  544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVIASIMCVYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLACGQSPEIVKE 707          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_RAT (Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32
Identity = 76/166 (45.78%), Postives = 99/166 (59.64%), Query Frame = 3
Query:  201 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK  W EL    E +G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKNDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_PONAB (Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo abelii GN=DPYD PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 3
Query:  180 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  513 ASVSAKPELPLFYTAIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_HUMAN (Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sapiens GN=DPYD PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 3
Query:  180 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  513 ASVSAKPELPLFYTPIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_DICDI (Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  201 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            D+S+ + G++ PNPF + S  P T+  +++R+F++GWG  V KT SLD   V NV+PR  R     +    GQ   + NIELIS++      K   +LK  +PDRI+IASIM  +NK  W +L    E +G D IE+N SCPHGM E+ MG A GQD  L+
Sbjct:  530 DISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLVTNVSPRIVRGTTSGHHFGPGQG-AFLNIELISEKTCHYWCKAIGELKRDFPDRIVIASIMCGFNKEDWTQLAKMAEASGADGIELNLSCPHGMGEKGMGLACGQDTELV 689          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_PIG (Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scrofa GN=DPYD PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.397e-31
Identity = 79/185 (42.70%), Postives = 107/185 (57.84%), Query Frame = 3
Query:  180 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E +G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  513 ASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELV 691          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_CAEBR (Probable dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 71/170 (41.76%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  195 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEE 689
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P +I++ASIM  YNK  W EL  + E  G D +E+N SCPHGM E+ MG A GQ   +++E
Sbjct:  554 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVVASIMCVYNKEDWIELATKSEAAGADILELNLSCPHGMGEKGMGLACGQSPEIVKE 717          
BLAST of FC930712 vs. ExPASy Swiss-Prot
Match: DPYD_BOVIN (Dihydropyrimidine dehydrogenase [NADP+] OS=Bos taurus GN=DPYD PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 76/185 (41.08%), Postives = 105/185 (56.76%), Query Frame = 3
Query:  180 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLL 683
            AS SA+P            D+S+ +  L+  NPF + S  P T+ ++++RAF+ GW   + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YN+  W EL  + E +G DA+E+N SCPHGM ER MG A GQD  L+
Sbjct:  513 ASVSAKPELPLFYTPIDLVDISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNRNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELV 691          
The following BLAST results are available for this feature:
BLAST of FC930712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPYD_DANRE1.367e-3244.58Dihydropyrimidine dehydrogenase [NADP+] OS=Danio r... [more]
DPYD_MOUSE2.332e-3245.78Dihydropyrimidine dehydrogenase [NADP+] OS=Mus mus... [more]
DPYD_CAEEL3.977e-3243.53Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorh... [more]
DPYD_RAT5.194e-3245.78Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus ... [more]
DPYD_PONAB8.860e-3242.70Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo a... [more]
DPYD_HUMAN1.157e-3142.70Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sa... [more]
DPYD_DICDI1.157e-3144.10Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyos... [more]
DPYD_PIG4.397e-3142.70Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scr... [more]
DPYD_CAEBR9.796e-3141.76Probable dihydropyrimidine dehydrogenase [NADP+] O... [more]
DPYD_BOVIN1.847e-2941.08Dihydropyrimidine dehydrogenase [NADP+] OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionC34010E03EF PostHarvC1 Citrus clementina cDNA clone C34010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930712 ID=FC930712; Name=FC930712; organism=Citrus clementina; type=EST; length=715bp
GAATCCAAAAGAATCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTC
CTTTTATCTCCATCCATGGCATCATTGAATTTGAATCAGATCATAAGCAA
CAGCAACACCTCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTA
GTCGAATTGGGTTGAGGGTTTTGGCTTCTGCTTCAGCTTCAGCAGAGCCA
GACTTGAGTATTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTAT
CGGATCGGGTCCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTG
ATGAAGGCTGGGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCA
AAAGTTATAAACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAA
TGGATCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTCATTA
GCGATCGGCCGCTTGAAACAATGTTGAAAGAATTTAAACAATTAAAAGCA
TTGTATCCGGATAGGATTCTCATTGCTTCAATTATGGAAGAGTATAACAA
AGCTGCATGGGAGGAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATG
CAATAGAAGTTAATTTTTCATGTCCCCATGGCATGCCGGAACGTAAAATG
GGGGCTGCTGTTGGCCAAGATTGTAGGCTATTGGAAGAGTTTGTGGTTGG
ATAATGCAAAGCTAC
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