FC930713

Overview
NameFC930713
Unique NameFC930713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11292 contig Ccv1_Contig11292:787..1471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930713 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 4.776e-104
Identity = 182/228 (79.82%), Postives = 205/228 (89.91%), Query Frame = 2
Query:    2 YEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNL 685
            YEIGAD TASIETLMNHLQETA+NH  +AGLL  GFGATP M KKNLIWVVTRMQVVVDRYPTW DVV V+TWVSASGKNGMRRDWL+ N++TGE LTRATS+WVMMNKLTRRLSK+P+EVR EIEP+F+NSDPV+ EDS+KL KL DSTA++V +GLTP+WSDLDVNQHVNNVKYIGWILESAP  ILESH+L+++TLEYRRECGRDSVLQSLT VSD +  N VN+
Sbjct:  143 YEIGADQTASIETLMNHLQETAINHCRSAGLLGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNSETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLAEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNV 370          
BLAST of FC930713 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.153e-92
Identity = 157/217 (72.35%), Postives = 188/217 (86.64%), Query Frame = 2
Query:    2 YEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAV 652
            YEIGAD TASIET+MNHLQETALNHV  AGL + GFG TP M K++LIWVV +MQV+V+RYPTW D V V TWV+ SGKNGMRRDWLI +  TGE LTRA+S+WVMMN+ TRRLSK+PDEVR EIEP+F++S PV+++D RKLPKL + TAD +R+GLTPRW+DLDVNQHVNNVKYIGWILES P ++LE+ +L S+TLEYRRECGR+SVL+SLTA+
Sbjct:  147 YEIGADRTASIETVMNHLQETALNHVKIAGLSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISDCNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAM 363          
BLAST of FC930713 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.213e-76
Identity = 133/218 (61.01%), Postives = 166/218 (76.15%), Query Frame = 2
Query:    2 YEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVS 655
            YE+G D + SI  +MNH+QE  LNH  + G+L  GFG T  M+K++L+WVV R  V V+RYPTW D V VE W+ ASG NGMRRD+L+R+ KTGE LTR TSL V+MN  TRRLS +PDEVR EI P F+++  V D++ +KL KL DSTADY++ GLTPRW+DLDVNQHVNN+KY+ W+ E+ P  I ESH ++S TLEYRREC RDSVL+SLT VS
Sbjct:  116 YEVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEVRGEIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTTVS 333          
BLAST of FC930713 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.386e-76
Identity = 135/218 (61.93%), Postives = 164/218 (75.23%), Query Frame = 2
Query:    2 YEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVS 655
            YE+G D + SI  +MNHLQE ALNH  + G+L  GFG T  M+K++LIWVV R  V V+RYP W D V VE WV ASG NG R D+L+R+ KTGE LTR TSL VMMN  TRRLSK+P+EVR EI P F+++  V DE+ +K  KL DSTADY++ GLTPRW+DLD+NQHVNN+KY+ WILE+ P  I ESH ++S T+EYRREC  DSVLQSLT VS
Sbjct:  116 YEVGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVRGEIGPAFIDNVAVKDEEIKKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS 333          
BLAST of FC930713 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.274e-56
Identity = 105/220 (47.73%), Postives = 149/220 (67.73%), Query Frame = 2
Query:    2 YEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPV--VDEDSRKLPKLG--DSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTA 649
            YE+G + TA++ET+ N LQE   NH  + G    GF  TP M K +LIWV  RM + + RYP W+DVV +ETW  + G+ G RRDW+I++  T E + RATS WVMMN+ TRRL K+ D+VR E   +   +  +   +E+++ L K+   +  A + R GL+PR +DLD+NQHVNNV YIGW+LES P+++L +H+L ++TL+YRREC  D V+ SLT+
Sbjct:   91 YEVGINKTATVETIANLLQEVGGNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTS 310          
The following BLAST results are available for this feature:
BLAST of FC930713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATB_GOSHI4.776e-10479.82Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO7.153e-9272.35Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA4.213e-7661.01Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
FATB_CINCA9.386e-7661.93Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATA_CORSA1.274e-5647.73Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC34010E04EF PostHarvC1 Citrus clementina cDNA clone C34010E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930713 ID=FC930713; Name=FC930713; organism=Citrus clementina; type=EST; length=685bp
ATATGAGATAGGTGCTGATGGTACTGCATCTATAGAGACATTAATGAATC
ATTTACAGGAAACAGCGCTTAATCATGTTATGACTGCTGGTCTTCTAGAT
GCTGGCTTTGGTGCAACCCCAGCGATGGCTAAAAAGAACCTGATATGGGT
GGTTACTCGGATGCAGGTTGTTGTAGACCGCTATCCCACTTGGAATGATG
TTGTAAATGTAGAAACTTGGGTTAGTGCATCTGGAAAAAATGGTATGCGG
CGTGATTGGCTCATTCGCAATGCTAAGACAGGTGAAACATTAACAAGAGC
AACCAGTCTGTGGGTAATGATGAATAAACTGACTAGGAGGTTGTCCAAAA
TGCCCGATGAAGTTCGTCAGGAAATTGAACCGTATTTTCTGAATTCTGAC
CCTGTTGTCGATGAGGATAGCAGGAAATTACCAAAACTTGGCGACAGTAC
TGCAGATTATGTTCGTAGAGGTTTAACTCCTAGGTGGAGTGATTTAGATG
TCAACCAGCATGTCAATAATGTGAAGTACATTGGCTGGATCCTAGAGAGT
GCTCCTCAGCAGATCTTGGAGAGTCATCAGCTGGCATCTGTGACCCTGGA
GTATAGGAGGGAGTGCGGAAGGGACAGTGTGTTGCAGTCCCTGACTGCTG
TCTCAGACAAGGACATTGGCAATTTGGTGAACTTG
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