FC930721

Overview
NameFC930721
Unique NameFC930721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930721_ssr67 microsatellite FC930721_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12503 contig Ccv1_Contig12503:62..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.230e-39
Identity = 71/147 (48.30%), Postives = 113/147 (76.87%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMESTQR 731
            A SA+FL+D KG+VL+ R+YRGDV    A +F +K++E++    +  P++ ++G+SY++++H+N++L+  + +N NAA++L FL+++++VF  YF+ELEEES+RDNFVV+YEL+DEMMDFGYPQ TE  IL E+   + Y++E   R
Sbjct:    2 AASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILEEED--LNLKPIIQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFKELEEESIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGAR 146          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 70/149 (46.98%), Postives = 107/149 (71.81%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMESTQRPP 737
            A SA+F+LD+KG+ ++ R+YRGD+     ++F   L+EK+ +  S  PV+     +++FI+H+N+YL++A R N N   +L FL++ V+VF  YF+++EEES+RDNFVV+YELLDEMMDFG+PQ TE+ IL E+   +  ++ S  RPP
Sbjct:    2 ATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEG-SAAPVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEGQKLISAPRPP 149          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 69/150 (46.00%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES-TQRPP 737
            + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I+H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T++ IL E+   + +++E+   RPP
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLS-PILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPP 150          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 69/150 (46.00%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES-TQRPP 737
            + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I+H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T++ IL E+   + +++E+   RPP
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLS-PILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPP 150          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 69/150 (46.00%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES-TQRPP 737
            + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I+H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T++ IL E+   + +++E+   RPP
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLS-PILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPP 150          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 69/150 (46.00%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES-TQRPP 737
            + SA+++LD+KG+VL+ R+YRGDV   + E F   L+EK+ +     P++   GV +++I+H+N+YL+  S++N   + +  FL++VV VF  YF+ELEEES+RDNFV++YELLDE+MDFGYPQ T++ IL E+   + +++E+   RPP
Sbjct:    2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLS-PILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPP 150          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 2.483e-32
Identity = 63/144 (43.75%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES 722
            + SA+F+LD+KG+ L+ R+Y+GDV+  + E F   L++++ +  +  P++    V +L+I+HSN+YL+  + +N NA+ +  FL++ ++VF  YF+ELEEES+RDNFV+VYELLDE+MDFG+PQ T++ IL E+    + ++E+
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEG-ALAPLLSHGQVHFLWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQSNKLET 144          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 64/147 (43.54%), Postives = 98/147 (66.67%), Query Frame = 3
Query:  297 SALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMESTQRPP 737
            SA+F+L++KG+V++ RDYR D+     E+F     E + +     P +   G++Y++I H++VYL+  S+ N +A  +L FL ++ DVF  YF+EL+EES+RDNFV+VYELLDE+MDFG+PQ TE  IL E+    +  ++    PP
Sbjct:    3 SAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFPQTTETKILQEYITQTSNTVKKHAPPP 149          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 62/144 (43.06%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES 722
            + SA+F+LD+KG+ L+ R+Y+GDV+  + + F   L++++ +  +  P++    V +L+I++SN+YL+  + +N NA+ +  FL+++V+VF  YF+ELEEES+RDNFV+VYELLDE+MDFG+PQ T++ IL E+      ++E+
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEG-ALTPLLSHGRVHFLWIKYSNLYLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGNKLET 144          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.988e-31
Identity = 62/144 (43.06%), Postives = 103/144 (71.53%), Query Frame = 3
Query:  291 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRMES 722
            + SA+F+LD+KG+ L+ R+Y+GDV   + + F   L++++ +     P++    V +L+I+HSN+YL+  + +N NA+ +  FL++ V+VF  YF+ELEEES+RDNFV+VY+LLDE+MDFG+PQ T++ IL E+      ++E+
Sbjct:    2 SASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLA-PLLSHGRVHFLWIKHSNLYLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYDLLDELMDFGFPQTTDSKILQEYITQQGNKLET 144          
The following BLAST results are available for this feature:
BLAST of FC930721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP1M_DICDI1.230e-3948.30AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M_CAEEL2.835e-3646.98AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M1_RAT1.077e-3546.00AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE1.077e-3546.00AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M1_HUMAN1.077e-3546.00AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN1.077e-3546.00AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M2_HUMAN2.483e-3243.75AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M1_SCHPO4.236e-3243.54AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]
AP1M2_BOVIN7.225e-3243.06AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP1M2_MOUSE7.988e-3143.06AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]

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Properties
Property NameValue
Genbank descriptionC34010E12EF PostHarvC1 Citrus clementina cDNA clone C34010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930721 ID=FC930721; Name=FC930721; organism=Citrus clementina; type=EST; length=739bp
GGCTGCGCGGCTTATGTTACAGCATAGAAGTTAGAAGAAGGCAAGCAGCA
ATAAATAATAGTGAAAGATCGATCGATCTCTCTCCATTACCGTTGGTTGA
TTTAAGGAGTCTGACAGAGACAGTTTATCTTCACCACCATGCATCATCTA
AATGGAGCCACAAAATTTACAACTCCCAGATTCAGTTTCGCATGAATTGT
TGTTCTCACTTCTCAGTTAACGACTTTTATCAATTCCGTCAGATCTCTGA
TTGATCTTTAGAAGCCCTAGAAGAAGACAAAATGGCAGGTGCTGTCTCCG
CACTCTTTCTTCTAGACATAAAGGGCCGTGTTCTGGTGTGGCGCGACTAC
CGTGGTGACGTCTCTGCAAAGCAAGCCGAGCGCTTCTTCACCAAGCTCAT
CGAAAAAGATGGAGATGCACAGTCGCAGGATCCGGTTGTATACGATAATG
GAGTCTCATACTTGTTTATACAGCACTCCAATGTTTATCTTATGACAGCG
TCGAGGCAGAATTGCAATGCTGCCAGCCTTCTTTTCTTTCTACACCGCGT
AGTTGATGTCTTTAAACATTACTTTGAAGAGTTAGAGGAGGAATCGCTTA
GGGATAACTTTGTTGTTGTGTATGAGTTGCTTGATGAAATGATGGACTTT
GGTTATCCTCAATATACAGAAGCGAATATCTTAAGTGAATTTCATCAGAC
TGATGCATATAGGATGGAAAGTACTCAGAGGCCTCCTAT
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