FC930722

Overview
NameFC930722
Unique NameFC930722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930722_ssr732 microsatellite FC930722_ssr732:732..743. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:111..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 3.131e-78
Identity = 152/215 (70.70%), Postives = 171/215 (79.53%), Query Frame = 1
Query:   64 MEKAXXXXXXXXXXXXPSSSQTSDSPA-ISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            MEKA            PSSS + +  A +SAS C AG++A Y R   + DDVVIVAA+RT +CK+KRG FKDT  DDLLAPVL+A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N ++  G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD
Sbjct:    1 MEKAIERQRVLLEHLRPSSSSSHNYEASLSASACLAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQD 215          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.719e-72
Identity = 145/214 (67.76%), Postives = 162/214 (75.70%), Query Frame = 1
Query:   64 MEKAXXXXXXXXXXXXPSSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            MEKA            PSSS  +   ++SAS C + ++A Y     + DDVVIVAA RTA+CKAKRG FKDT  D+LLA VL+A+IEKT +NPSEVGDIVVGTVL PGS RA ECRMAAFYAGFPETVP+RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N     G VNP V+ F QA +CLLPMGITSENVA RF V+R+EQD
Sbjct:    1 MEKATERQRILLRHLQPSSSSDA---SLSASACLSKDSAAYQ----YGDDVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWKGSVNPNVKKFEQAHNCLLPMGITSENVAHRFNVSREEQD 207          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.722e-68
Identity = 133/200 (66.50%), Postives = 162/200 (81.00%), Query Frame = 1
Query:  115 SSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG--QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            S+S     P++ + +    E +      AF DD+VIVAAYRTAICKA+RGGFKDTL DDLLA VLKAV+E+T L+PSEVGDIVVGTV+APGS RAMECR+AA++AGFP++VP+RTVNRQCSSGLQAVADVA +I+AG YDIGI AG+ESM+ + I   G    NP+ + F +ARDCLLPMGITSENVA+RFGVTR+EQD+
Sbjct:   21 SNSSLKHEPSLLSPVNCVSEVSPM---AAFGDDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTDHIPGGGFHGSNPRAQDFPKARDCLLPMGITSENVAERFGVTREEQDM 217          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.418e-46
Identity = 102/196 (52.04%), Postives = 135/196 (68.88%), Query Frame = 1
Query:  118 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            + ++  S A+ A+ CSAG         A   DVV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+  AM  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD
Sbjct:   12 AGRSESSSALQAAPCSAGFPQ------ASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSERGNPGNISSRLLENEKARDCLIPMGITSENVAERFGISRQKQD 200          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.160e-46
Identity = 102/196 (52.04%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  118 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            + +   S A+ A+ CSAG         A   DVV+V   RT I +A RG FKDT  D+LL+ VL AV++  +L P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFGV+RQ+QD
Sbjct:   12 AGRPESSSALQAAPCSAGFLQ------ASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSQRGNHGNISSRLLENEKARDCLIPMGITSENVAERFGVSRQKQD 200          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  118 SSQTSDSPAISASICSAGEAAGYHRKP-AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            + +   S A+ A+ CSA       R P A   DVV+V   RT I +A RGGFK+T  D+LL+ VL AV++  RL P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM+++ +   G ++ ++    +ARDCL PMG+TSENVA+RFG++RQ+QD
Sbjct:   12 AGRPESSSALQAAPCSA-------RFPQASASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSGMGNPGNISSRLLESEKARDCLTPMGMTSENVAERFGISRQKQD 200          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.959e-45
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVV+V   RTAIC+A RGGFKDT  D+LL+ V+ AV++   L P ++GDI VG VL PG+   M  R+A F +  PETVPL TVNRQCSSGLQAVA +A  I+ G YDIG+A G+ESM++      G +  ++    +ARDCL+PMGITSENVA+RFG++R++QD
Sbjct:   37 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIM-ARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQD 200          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.016e-44
Identity = 99/196 (50.51%), Postives = 133/196 (67.86%), Query Frame = 1
Query:  118 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            + +   S A+ A+ CSA          A   DVV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+   M  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM++++    G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD
Sbjct:   12 AGRPESSSALQAAPCSATFPQ------ASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSNRGNPGNISSRLLESDKARDCLIPMGITSENVAERFGISRQKQD 200          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.270e-36
Identity = 84/167 (50.30%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  208 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN-SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DDVVI AAYRTA  K  +G FKDT + +LLA +L+ ++++++++P  +GD+V G VLA G+  A E R A   AG PETVP   +NRQCSSGL AV DVA  I+AG  DIGI  G+ESM+     + V   + K +   +A+ CL+PMGITSENVA ++ V+R+ QD
Sbjct:   28 DDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAG-ATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSNQYGPNSVTPFSNKFQNNEEAKKCLIPMGITSENVAAKYNVSRKAQD 193          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  208 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN--SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DDVVIVAAYRTAI K  +G F++  ++ +L   LK  I+KT ++PS + D+ +G VL  A G+T   E R A   AG P T     VNR CSSGL A++D+A  IK G  + G+A G ESM+ N     V  +++P +    Q   CL+PMGIT+ENVA +F ++R+ QD
Sbjct:   25 DDVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGAT---EHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLIPMGITNENVANQFNISRERQD 191          
The following BLAST results are available for this feature:
BLAST of FC930722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
THIK2_ARATH3.131e-7870.703-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH5.719e-7267.763-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH1.722e-6866.503-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_RAT1.418e-4652.043-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKB_MOUSE3.160e-4652.043-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE5.390e-4651.273-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIK_HUMAN5.959e-4555.763-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKA_RAT1.016e-4450.513-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIK_YARLI2.270e-3650.303-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
THIKB_CANTR2.198e-3145.293-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC34010F01EF PostHarvC1 Citrus clementina cDNA clone C34010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930722 ID=FC930722; Name=FC930722; organism=Citrus clementina; type=EST; length=753bp
GTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAAC
CTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTC
AACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCT
GCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGC
TTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCA
AGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCA
CCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGT
AGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCA
TGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCC
CTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGA
TGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTG
GATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAAC
CCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGG
TATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGC
AAGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCA
TCT
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