FC930726

Overview
NameFC930726
Unique NameFC930726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.980e-103
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIY VGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR+DYL++KSE+RIV
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIV 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.877e-102
Identity = 175/191 (91.62%), Postives = 186/191 (97.38%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIY VGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NS HAQEALRRAKFKFP RQKIIVSRKWGFTKF+R+DY+++KS++RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRIL 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 8.319e-102
Identity = 178/191 (93.19%), Postives = 184/191 (96.34%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIY VGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NS +AQEALRRAKFKFPGRQKIIVSRKWGFTK +R+DY R KSE+RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRIL 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 6.592e-99
Identity = 171/191 (89.53%), Postives = 182/191 (95.29%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIY VGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIM 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 6.592e-99
Identity = 171/191 (89.53%), Postives = 182/191 (95.29%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIY VGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIM 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.468e-98
Identity = 171/191 (89.53%), Postives = 180/191 (94.24%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIY VGMK+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSR+DYL++KSE RIV
Sbjct:    1 MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIV 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.288e-98
Identity = 171/191 (89.53%), Postives = 179/191 (93.72%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIY VGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIM 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 7.288e-98
Identity = 171/191 (89.53%), Postives = 179/191 (93.72%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIY VGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N++HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIM 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 1.624e-97
Identity = 169/191 (88.48%), Postives = 179/191 (93.72%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIY VGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R+DY + + E RIV
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIV 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.769e-97
Identity = 168/191 (87.96%), Postives = 179/191 (93.72%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIY VGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R+D+ + + E R+V
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVV 191          
The following BLAST results are available for this feature:
BLAST of FC930726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SOLME1.980e-10394.2460S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_VITRI4.877e-10291.6260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES8.319e-10293.1960S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL101_ORYSJ6.592e-9989.5360S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI6.592e-9989.5360S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_MAIZE1.468e-9889.5360S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ7.288e-9889.5360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI7.288e-9889.5360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ARATH1.624e-9788.4860S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH2.769e-9787.9660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC34010F05EF PostHarvC1 Citrus clementina cDNA clone C34010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930726 ID=FC930726; Name=FC930726; organism=Citrus clementina; type=EST; length=721bp
GTTGGACCAAAATCACGAAACATGACGGAAGCGCGGGCGTATTAGGGTTT
GGGAAACACACCCACATATATACCAAAGCCATTTCTTTTTTCTCCCACTT
TTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTCGCCAT
GGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATC
CGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTAT
GGTGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCA
CTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTG
CTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCT
TTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAA
AATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTG
CTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTC
CTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGC
TCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAAGACCGTATTGTG
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