FC930734

Overview
NameFC930734
Unique NameFC930734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.301e-72
Identity = 135/188 (71.81%), Postives = 143/188 (76.06%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHG-----VDHNLD 550
            TFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG EADINF+I+DY+DDLKQ                  M+NLTKEEFVHVLRRQS GFPRGSSKYRGVTLH CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYD+AA+KCNGKDAVTNFDPS+Y +EL A   G      DHNLD
Sbjct:  136 TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQ------------------MTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESSGNPTTPQDHNLD 305          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.328e-66
Identity = 125/184 (67.93%), Postives = 135/184 (73.37%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGV--DHNL 547
            TFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF IEDY DDLKQ                  M NLTKEEF+HVLRRQS GFPRGSSKYRGVTLH CGRWE+R+GQFL KKYVYLGLFDTE+EAARAYD+AA+KCNGKDAVTNFDP +Y++E   S       HNL
Sbjct:  101 TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLDDLKQ------------------MGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSETTRNGHNL 266          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: RAP27_ARATH (Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 103/184 (55.98%), Postives = 121/184 (65.76%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHG--VDHNL 547
            TFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF++ DYE+D+KQ                  + NL+KEEFVH+LRRQS GF RGSSKYRGVTLH CGRWEARMGQFLGKK               AYD+AA+  NG++AVTNF+ S YQ+E+ +  +   +D NL
Sbjct:  158 TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFTLGDYEEDMKQ------------------VQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK---------------AYDKAAINTNGREAVTNFEMSSYQNEINSESNNSEIDLNL 308          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 80/186 (43.01%), Postives = 106/186 (56.99%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTC-GRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASG 526
            T +R TGR+E+H+WD           GKQVYLG +D+            +K+ G +  +NF  E Y  +L++                  M  +TKEE++  LRRQS+GF RG SKYRGV  H   GRWEAR+G+  G KY+YLG ++T+ EAA AYD AA++  G +AVTNFD S Y D LK  G
Sbjct:   70 TRHRWTGRFEAHLWDKSSWNSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEE------------------MQRVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIDRLKKKG 237          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 82/182 (45.05%), Postives = 101/182 (55.49%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNL 547
            TFYRRTGRWESHIWD GKQVYLGGFDT            +KFRG EADINF I DYE+DLK                  QM+NL+KEE V VLRRQS+GF R +S+Y+GV L   G W A+M Q  G                   D+AAV+  G++A +  +P   +   +A+   +D NL
Sbjct:  165 TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLK------------------QMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGN---------------MGCDKAAVQWKGREAASLIEPHASRMIPEAANVKLDLNL 313          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AIL5_ARATH (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 78/185 (42.16%), Postives = 106/185 (57.30%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKAS 523
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE +L++                  M ++T++EFV  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD S Y  +  AS
Sbjct:  208 TRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEE------------------MKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIAS 374          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE ++++                  M N+T++EFV  +RR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y
Sbjct:  195 TRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEE------------------MKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 354          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AIL7_ARATH (AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 75/181 (41.44%), Postives = 105/181 (58.01%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDE 511
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G+ A  NF +  Y  +L++                  M+++TK+EF+  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y  E
Sbjct:  178 TRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYSKELEE------------------MNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIE 340          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: ANT_ARATH (AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NFS E+Y+ +++                   M N+T++E+V  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD + Y
Sbjct:  288 TRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIED------------------MKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AIL1_ARATH (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 72/178 (40.45%), Postives = 104/178 (58.43%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G    +NF + +YE ++++                  ++N+ ++EFV +LRR S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD + Y
Sbjct:  228 TRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEE------------------LNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387          
The following BLAST results are available for this feature:
BLAST of FC930734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AP2_ARATH5.301e-7271.81Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
TOE3_ARATH3.328e-6667.93AP2-like ethylene-responsive transcription factor ... [more]
RAP27_ARATH1.501e-5055.98Ethylene-responsive transcription factor RAP2-7 OS... [more]
WRI1_ARATH3.714e-3343.01Ethylene-responsive transcription factor WRI1 OS=A... [more]
TOE2_ARATH4.851e-3345.05AP2-like ethylene-responsive transcription factor ... [more]
AIL5_ARATH2.662e-3142.16AP2-like ethylene-responsive transcription factor ... [more]
PLET2_ARATH1.321e-3041.57AP2-like ethylene-responsive transcription factor ... [more]
AIL7_ARATH1.321e-3041.44AP2-like ethylene-responsive transcription factor ... [more]
ANT_ARATH1.725e-3041.57AP2-like ethylene-responsive transcription factor ... [more]
AIL1_ARATH1.725e-3040.45AP2-like ethylene-responsive transcription factor ... [more]

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Properties
Property NameValue
Genbank descriptionC34010G01EF PostHarvC1 Citrus clementina cDNA clone C34010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930734 ID=FC930734; Name=FC930734; organism=Citrus clementina; type=EST; length=724bp
CACCTTTTACAGAAGAACTGGAAGATGGGAATCTCATATATGGGATTCTG
GGAAACAAGTTTATCTAGGTGGATTTGACACTGCACATGCAGCTGCTCGT
GCTTATGATAGGGCAGCTATCAAGTTCCGGGGAGCGGAGGCAGACATAAA
CTTTAGTATAGAAGATTATGAGGATGACTTGAAACAGGAAAGCCTATGGG
TTTACATATGGAAAGATTCTCGTAATGTTGTATGATAACAGATGAGCAAC
TTAACCAAGGAAGAGTTTGTACATGTACTTCGCCGACAAAGCGCCGGTTT
CCCCAGAGGAAGCTCCAAATATAGAGGAGTTACTTTGCACACATGTGGAA
GATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTG
GGCTTGTTCGATACTGAGGTCGAAGCTGCAAGGGCATATGATAGAGCTGC
AGTTAAGTGTAATGGCAAAGATGCTGTTACTAATTTTGATCCCAGCTTAT
ATCAAGATGAGCTTAAAGCCTCTGGTCATGGTGTAGACCATAATCTAGAT
TTGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGCAGTGCGGACTTTGC
TAATAGAATGCAATATACTGTAATGGAACGGCCTGCTCCGGCATCATTGC
CCAATGAAGTTGACTGGCACAACCGGGGTTATAGGCCCTAGCAGCAGCAA
GAAGCGTACAGTAGGCAGCATGAT
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