FC930741

Overview
NameFC930741
Unique NameFC930741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15510 contig Ccv1_Contig15510:44..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.971e-88
Identity = 160/214 (74.77%), Postives = 180/214 (84.11%), Query Frame = 2
Query:   38 LESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKK-XXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLAP 676
            ++SPFK D+++G+VALITGGGSGIGFEIS+QFGKHGAS+AIMGRRKQVLD AVSALRSLGI+A+G EGDVR+QE A++VVE+TF+HFGKLDILVNAAAGNFL +AEDLSPNGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAPGPIG TPGM+KL P
Sbjct:    1 MDSPFKPDVVRGQVALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILVNAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGGTPGMSKLVP 214          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 85/208 (40.87%), Postives = 116/208 (55.77%), Query Frame = 2
Query:   50 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQ-VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I+GR  Q V  AA   + + G + +    DVR        V+   + FGK++IL+N AAGNFL  A  LS N F+TV+DID++GTF +   ++ Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L
Sbjct:   21 FCPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAAKKLVAATGKRCLPLSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTFNV--SSVLYKK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRL 220          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.637e-32
Identity = 83/208 (39.90%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   50 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSL-GIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            +  D+L  +VA ITGGGSGIGF I+    +HG    I  R  + +  A   L S  G + +    DVR+ E     V+ T + FG++DIL+N AAGNFL  A  LS N F+TVM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +APGPI  T G  +L
Sbjct:   28 YSPDLLSDQVAFITGGGSGIGFRIAEVLMRHGCDTVIASRNLEKISQAAKKLTSTTGRRCLPIAMDVRQPETILAAVDETLKTFGRVDILINNAAGNFLCPATSLSFNAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAPGPISGTEGYRRL 227          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.101e-32
Identity = 86/208 (41.35%), Postives = 113/208 (54.33%), Query Frame = 2
Query:   50 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I  R   +VL AA     + G + +    DVR        V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L
Sbjct:   21 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRL 220          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 86/208 (41.35%), Postives = 113/208 (54.33%), Query Frame = 2
Query:   50 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I  R   +VL AA     + G + +    DVR        V+   + FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APGPI  T G+ +L
Sbjct:   21 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAIVAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGPISGTEGLRRL 220          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 84/208 (40.38%), Postives = 115/208 (55.29%), Query Frame = 2
Query:   50 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I+ R   +V +AA   + + G + +    DVR        V+   + FGK+DIL+N AAGNFL  A  LS N F+TV+DID++GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +APG I  T G+ +L
Sbjct:   21 FCPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVSRSLPRVSEAAKKLVAATGKRCLPLSMDVRVPPAVMAAVDQALKEFGKIDILINCAAGNFLCPASALSFNAFKTVVDIDTLGTFNV--SRVLYEK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAPGAISGTEGLRRL 220          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 69/202 (34.16%), Postives = 106/202 (52.48%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 670
            ++ K  +ITGG SG+G  ++ +  + G  V + GR  + L+     +++   +   F+ DVR    A  +++   + FG+LD L+N AAGNF+  AE L+PNG++ V++I   GTF     A ++               ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAPGPI  T G  KL
Sbjct:    1 MEKKAVIITGGSSGMGKAMAKKQAELGWHVMVTGRNHEALEETKKEIQTFEGQVACFQMDVRSDSAASDMIKEAVKAFGRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKL 196          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 78/220 (35.45%), Postives = 110/220 (50.00%), Query Frame = 2
Query:   29 KMSLESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLG-----IKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            K   E  ++ D+ KGKVA +TGG   I    +      G   AI+GR ++  + A   +  L      + A+    DVR  E  +  V+ T E FGK+D ++  AAGNF+    +LSPN F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAPG I +T G+ +LA
Sbjct:   10 KFVTEGSWRPDLFKGKVAFVTGGAGTICRVQTEALVLLGCKAAIVGRDQERTEQAAKGISQLAKDKDAVLAIA-NVDVRNFEQVENAVKKTVEKFGKIDFVIAGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKK--------SKGSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELG-PLGIRSNCIAPGAIDNTEGLKRLA 219          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 69/195 (35.38%), Postives = 100/195 (51.28%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GKVAL+TGGG+G+G  I+T F   GASVAI  RR  VL+     +R S G     F+ DV+      K  ++  +  G   DIL+N AAGNF+++ E LSPN + T++DI   GT  +  E                   +L+I+     + + + +           +T++LA EW A + +R N IAPGPI
Sbjct:   24 LNGKVALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSSTGGVCEPFQMDVKDPAKVAKAFDAVEKKLGHTPDILINNAAGNFIMATERLSPNAYGTIIDIVLKGTLHVTTEL------GRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEW-AKHGLRFNAIAPGPI 211          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: YVX3_CAEEL (Uncharacterized oxidoreductase T05C12.3 OS=Caenorhabditis elegans GN=T05C12.3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 72/203 (35.47%), Postives = 104/203 (51.23%), Query Frame = 2
Query:   44 SPFKAD-ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLD-AAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGK-LDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            SP   D  LKGKVAL+TGGG+GIG  I+T F   GASVAI  RR + L+  A   +++ G     F  D++         +   + FGK  DILVN AAGNF+++ E LSPN   T++DI   GT  +  E  K                + +I+A    + + + +           +T++LA EW + Y +R N ++PGPI
Sbjct:   15 SPILRDGALKGKVALVTGGGTGIGKAIATTFAHLGASVAIAARRMEKLEQTAEEIMKTTGGICEPFRMDIKDPGMVSDTFDKIDKKFGKHPDILVNNAAGNFIMATERLSPNAHGTIIDIVLKGTMNVTTELGK------RCIQSKTGASVTSITAAYARSGAPFIVPSAVSKAGVEIMTKSLATEW-SKYGLRFNAVSPGPI 210          
The following BLAST results are available for this feature:
BLAST of FC930741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DECR2_ARATH7.971e-8874.77Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE1.250e-3240.87Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
DECR2_DANRE3.637e-3239.90Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DECR2_HUMAN8.101e-3241.35Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_PONAB1.382e-3141.35Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_RAT1.805e-3140.38Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
FADH_BACSU1.748e-2634.16Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
SPS19_YEAST1.133e-2535.45Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
YXEK_CAEEL3.772e-2135.38Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
YVX3_CAEEL6.434e-2135.47Uncharacterized oxidoreductase T05C12.3 OS=Caenorh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010G08EF PostHarvC1 Citrus clementina cDNA clone C34010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930741 ID=FC930741; Name=FC930741; organism=Citrus clementina; type=EST; length=677bp
GCAAAAGCGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGT
TCAAGGCCGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGT
TCGGGAATTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTC
AGTTGCAATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTG
CTCTTCGGTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGT
AGGCAGGAACATGCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGG
GAAGCTTGACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAG
CTGAGGATTTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCT
GTCGGCACATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAAGG
TGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTG
CTACTTTACATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCC
AAGGCAGCTGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGC
TGACTATGATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATA
CCCCGGGCATGAATAAACTTGCACCTG
back to top