FC930748

Overview
NameFC930748
Unique NameFC930748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13258 contig Ccv1_Contig13258:589..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL1_MOUSE (Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 89/194 (45.88%), Postives = 120/194 (61.86%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWM--------AAGTGGSQTNTTRSS 678
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+ +    +                      N +PLPNPW         A+GT GS TNT  +S
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLVSSSSSAEG--------------TQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMSTS 339          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL1_RAT (Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 89/199 (44.72%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWM--------AAGTGGSQTNTTRSSSLGDA 693
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +RQTLE ARNP +M+EMMRN +R +SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+ +    +                      N +PLPNPW         A+G+ GS TNT  S+S G+A
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNPAMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLVSSPSSAEG--------------TQPSRTENRDPLPNPWAPQTPQSSPASGSTGSTTNTV-STSAGNA 343          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL4_MOUSE (Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 84/197 (42.64%), Postives = 124/197 (62.94%), Query Frame = 1
Query:  118 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW-------MAAGTGGSQTNTTRSSSL 684
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L G    + ++                    N  PLPNPW        A G+GG  T  + +S +
Sbjct:  178 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGN------NPFSSLAGNSDNSSSQ---------------PLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQV 353          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL4_HUMAN (Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 84/197 (42.64%), Postives = 124/197 (62.94%), Query Frame = 1
Query:  118 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW-------MAAGTGGSQTNTTRSSSL 684
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L G    + ++                    N  PLPNPW        A G+GG  T  + +S +
Sbjct:  183 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGN------NPFSSLAGNSDSSSSQ---------------PLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQV 358          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL1_PONAB (Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.913e-39
Identity = 82/189 (43.39%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMAAGTGGSQTNTTRSSSLG 687
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+      +                      N +PLPNPW    +  S  ++  +S++G
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFASLVSNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVG 343          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL1_HUMAN (Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.913e-39
Identity = 82/189 (43.39%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMAAGTGGSQTNTTRSSSLG 687
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+      +                      N +PLPNPW    +  S  ++  +S++G
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFASLVSNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVG 343          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL2_HUMAN (Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMAAGTGGSQTNTTRSSSLG 687
            Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA++  +    +                      N +PLPNPW       S   T+ ++S G
Sbjct:  170 QMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASVGSSSSSGEG--------------TQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTG 339          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL2_MOUSE (Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38
Identity = 84/190 (44.21%), Postives = 114/190 (60.00%), Query Frame = 1
Query:  121 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWM---AAGTGGSQTNTTRSSS 681
            Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA +  +    +                      N +PLPNPW       T  + T TT +SS
Sbjct:  181 QMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFATVGSSSTSGEG--------------TQPSRTENRDPLPNPWAPPPTTQTAATTTTTTTTSS 351          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 85/197 (43.15%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  109 PEFEQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATS-MAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMAAGTGGSQTNTTRSSSLGDAR 696
            P   Q    +  NP I +E+ N  ++ +L++NP+I R+++M NP+MRE+++ NPE+A +L+DP  LRQ+LE  RNPELMREMMRN DRAM NIE+ PEGFN+LRRMY  +QEP +NA +  A +    NSNP       Q    A                    PN+ PLPNPW    T  S T++  +SS   +R
Sbjct:   98 PGVPQNINDMMNNPMI-QEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNPELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQTNSNPI------QTNTDAN-------------------PNSQPLPNPW---STNSSSTSSNPTSSSPSSR 265          
BLAST of FC930748 vs. ExPASy Swiss-Prot
Match: UBQL3_MOUSE (Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  148 PNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMA--AGTGGSQTNTTRSSSLGDA 693
            P ++ ++++ P +Q L++N  ++R L+++NP M+ +I +NPE+ HILN+P  +RQT+E  RNP +M+EMMR+ DRA+SN+ES P G+N+LR MY  + +P LNA       GN       A   T     +R                    N +PLPNPW +    +GG Q    R S   DA
Sbjct:  165 PELVAQLVDDPFIQGLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQEQFG-GNPFVTATTASTTTTSSQPSR------------------TENCDPLPNPWTSTYGVSGGRQGRGGRQSGDQDA 329          
The following BLAST results are available for this feature:
BLAST of FC930748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBQL1_MOUSE2.044e-4145.88Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1[more]
UBQL1_RAT2.952e-4044.72Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV... [more]
UBQL4_MOUSE8.588e-4042.64Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1[more]
UBQL4_HUMAN1.122e-3942.64Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2[more]
UBQL1_PONAB1.913e-3943.39Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1[more]
UBQL1_HUMAN1.913e-3943.39Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2[more]
UBQL2_HUMAN1.240e-3843.39Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2[more]
UBQL2_MOUSE2.763e-3844.21Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1[more]
UBQL_DICDI1.980e-3643.15Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
UBQL3_MOUSE1.519e-2836.96Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010H03EF PostHarvC1 Citrus clementina cDNA clone C34010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930748 ID=FC930748; Name=FC930748; organism=Citrus clementina; type=EST; length=696bp
AATGAAGGTGATGCTCTTGGAGGAGCTGGTCTTGGAGCTTCTCTGTTTCC
TGGACTTGGCATCAATGGTTTAGGTGGCAGCGGAGGTGGTTTGTTTGGAG
CTGGACTTCCAGAATTTGAACAAGTGCAGCAACAACTGACCCGGAACCCC
AACATTATGAGAGAGATCATGAATATGCCCGTCGTGCAGAATCTTATGAA
TAACCCTGAGATAATGCGAAACTTGATAATGAACAATCCTCAAATGCGTG
AAATTATTGATCGAAACCCTGAGCTAGCACACATACTTAATGACCCTAGC
ACTCTGCGTCAGACACTTGAAGCTGCAAGAAATCCGGAGCTCATGCGTGA
AATGATGCGTAATACTGATAGAGCAATGAGCAATATTGAATCTTCTCCTG
AGGGATTTAATATGCTGAGGCGCATGTATGAAACTGTGCAAGAGCCATTT
CTTAATGCTACCTCTATGGCTGGGAATGCTGGAAATGACAACTCAAACCC
ATTTGCAGCTCTTTTGGGTACTCAGGGTGGAAACCAAGCCAGAGAAGGAT
CGAATAACCCATCTACCACTACGTCTGAATCTACCACTGGTTCTCCTGCT
CCAAACACTAACCCACTTCCTAATCCTTGGATGGCTGCTGGAACTGGAGG
TTCTCAAACTAACACCACAAGGTCAAGTTCTCTTGGGGATGCTAGG
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