FC930757

Overview
NameFC930757
Unique NameFC930757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13089 contig Ccv1_Contig13089:763..1459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4L_CHICK (Nucleolar complex protein 4 homolog OS=Gallus gallus GN=NOC4L PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.089e-46
Identity = 84/169 (49.70%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  138 KSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD 644
            K  F + W+TFL+  LP  +YK+VLV LH +++P+++ P ++ DFLT +Y +GG +S++AL+ LFIL+ QH LEYP+FY+KLY+LL PSI+  K+RA+FF L D  L S  LPAYL AAF+K+LSRL++  PP   L+++  I NL RRHP+   L+HR +G +  ++D
Sbjct:  241 KQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTVAYGVGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLDPSIYHVKYRARFFHLADLFLSSSHLPAYLVAAFIKRLSRLALTAPPEALLMVIPFICNLFRRHPACKVLMHRPNGPQDLSED 409          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4L_MOUSE (Nucleolar complex protein 4 homolog OS=Mus musculus GN=Noc4l PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 85/171 (49.71%), Postives = 121/171 (70.76%), Query Frame = 3
Query:  129 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHND 641
            K+ K  F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S++AL+ LFIL+ +H LEYP+FY+KLY LL PSIF  K+RA+FF L D  L S  LPAYL AAF K+L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E   D
Sbjct:  246 KEHKKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNGLFILIHKHNLEYPDFYQKLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPELDAD 416          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4L_RAT (Nucleolar complex protein 4 homolog OS=Rattus norvegicus GN=Noc4l PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 83/171 (48.54%), Postives = 121/171 (70.76%), Query Frame = 3
Query:  129 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHND 641
            K+ +  F + W+ FL+  LP+ +YK+VLV +H +++P L+ P ++ DFLT + D+GG +S++AL+ LFIL+ +H LEYP+FY++LY LL PSIF  K+RA+FF L D  L S  LPAYL AAF K+L+RL++  PP   L+++ LI NLLRRHP+   ++HR  G E   D
Sbjct:  246 KEQRKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHLAQPTLMIDFLTSACDVGGAISLLALNGLFILIHKHNLEYPDFYQRLYGLLDPSIFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPLICNLLRRHPACRVMVHRPQGPELDAD 416          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4B_XENLA (Nucleolar complex protein 4 homolog B OS=Xenopus laevis GN=noc4l-B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 83/178 (46.63%), Postives = 123/178 (69.10%), Query Frame = 3
Query:  129 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 662
            K+ K  F + W++FL+  L V +YK+VL+ LH +++P +S P ++ DFLT +YD+GG +S++AL+ LFIL+ QH LEYP+FY+KLY+LL PS+F  K+RA+FF L +  L S  LP YL AAF K+L+RL++  PP   L+I+  I NL+RRHP+   L+HR    +   D    E++
Sbjct:  257 KEQKRVFERVWMSFLKHQLSVSLYKKVLLILHESILPHMSKPSLMIDFLTAAYDVGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLEPSVFHVKYRARFFHLANLFLSSTHLPVYLVAAFAKRLARLALTAPPQVLLMIIPFICNLIRRHPACRVLIHRPSAGDLVTDPYIMEEQ 434          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC41_XENLA (Nucleolar complex protein 4 homolog A OS=Xenopus laevis GN=noc4l-A PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.341e-44
Identity = 87/191 (45.55%), Postives = 126/191 (65.97%), Query Frame = 3
Query:   90 KSNNNALSAATISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 662
            K+ NN     +  K  K  F + W+ FL+  L V +YK+VL+ LH +++P +S P ++ DFLT +YD+GG +S++AL+ LFIL+ QH LEYP+FY+KLY+LL PSIF  K+RA+FF L +  L S  LP YL AAF K+L+RL++  PP   L+I+  I NL+RRHP+   L+HR    +   D    E++
Sbjct:  244 KNVNNEDWKPSKLKDHKRVFERVWMIFLKHQLSVSLYKKVLLILHESILPHMSKPTLMIDFLTAAYDVGGAISLLALNGLFILIHQHNLEYPDFYKKLYSLLEPSIFHVKYRARFFHLANMFLSSTHLPVYLVAAFAKRLARLALTAPPQVLLMIIPFICNLIRRHPACRVLIHRPSAGDLATDPYIMEEQ 434          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4L_HUMAN (Nucleolar complex protein 4 homolog OS=Homo sapiens GN=NOC4L PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 84/171 (49.12%), Postives = 120/171 (70.18%), Query Frame = 3
Query:  129 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHND 641
            K+ +  F   W++FL+  LP+ +YK+VL+ +H A++P L+ P ++ DFLTR+ D+GG +S++AL+ LFIL+ +H LEYP+FY KLY LL PS+F  K+RA+FF L D  L S  LPAYL AAF K+L+RL++  PP   L+++  I NLLRRHP+   L+HR  G E   D
Sbjct:  246 KEHRRVFQAMWLSFLKHKLPLSLYKKVLLIVHDAILPQLAQPTLMIDFLTRACDLGGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPELDAD 416          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4L_DANRE (Nucleolar complex protein 4 homolog OS=Danio rerio GN=noc4l PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 87/192 (45.31%), Postives = 130/192 (67.71%), Query Frame = 3
Query:   87 EKSNNNALSAATISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKE 662
            ++S ++   AA + K+ K  F + W+ FLR  LP  +YK++LV LH +++P +S+P ++ DFL+ +YDIGG +S+ AL+ LF+ + +H L+YP+FY+KLY LL PSIF  K+RA+FF L +  L S  LP YL AAFVK+L+RLS+  PP+  L+++  I NL+RRHPS   L+HR    +   DD    +E
Sbjct:  242 QQSKHDDWKAAKL-KEHKRAFEQMWLLFLRYKLPGSMYKKILVILHESILPQMSDPKLMMDFLSAAYDIGGAISLSALNGLFVPIHEHNLDYPDFYKKLYNLLDPSIFHVKYRARFFHLANIFLSSTHLPVYLVAAFVKRLARLSLTAPPTALLILLPFICNLIRRHPSCRVLIHRPSAADEPCDDPYVMEE 432          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: YG06_SCHPO (Uncharacterized protein C1604.06c OS=Schizosaccharomyces pombe GN=SPBC1604.06c PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 77/177 (43.50%), Postives = 115/177 (64.97%), Query Frame = 3
Query:  114 AATISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDD 644
            ++T +  +K  F ++W++ L LPL V++YK+VL  +H+ VIPFL  P +L DFLT +Y+    VS++AL+ LF LM  H L+YP FY KLYALL  ++   K R++FF LLD  L S  LPA L A+F+K+L+RL++  PP    +++  I+N L+RHP+   +LHR       + D
Sbjct:  219 SSTETSSIKRAFQESWLSALSLPLSVNLYKQVLNVIHKRVIPFLQKPNLLMDFLTDAYNSHHAVSLLALNGLFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDLFLSSTHLPATLIASFIKRLARLALTAPPGAIAIVIPFIYNCLQRHPTCMQMLHRSSAESGDSFD 395          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: NOC4_YEAST (Nucleolar complex protein 4 OS=Saccharomyces cerevisiae GN=NOC4 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.835e-35
Identity = 75/176 (42.61%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  102 NALSAATISKKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLH 611
            N   A     K KS F K W++ L   L +  YK +L+ LH+ +IP    P  L DFLT SY++       GVV ++AL+ LF LM +  LEYPNFY KLY ++ P +   K+RA+FF L+D  L S  L A+L A+F+KKL+RL++  PPS  + ++  I+NL+R+HP+   +LH
Sbjct:  242 NPPQAIENESKFKSNFEKNWLSLLNGQLSLQQYKSILLILHKRIIPHFHTPTKLMDFLTDSYNLQSSNKNAGVVPILALNGLFELMKRFNLEYPNFYMKLYQIINPDLMHVKYRARFFRLMDVFLSSTHLSAHLVASFIKKLARLTLESPPSAIVTVIPFIYNLIRKHPNCMIMLH 417          
BLAST of FC930757 vs. ExPASy Swiss-Prot
Match: YO93_CAEEL (Uncharacterized protein T20B12.3 OS=Caenorhabditis elegans GN=T20B12.3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 52/169 (30.77%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  135 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHND 641
            + + +   W+  +   +   +  +++  + + VI  L  P    DF  + +D      +++L ++F L+++H  EYP FY+K+Y+L  PS+     +     LLDS L S  LP Y+ A+F+K+LSR  +L P      I+ LI NL+ RHP+ + L+HRE     ++D
Sbjct:  190 ISTDYDNVWMAVMNGKISDKLTLKLIPYITQNVISKLKAPFKSADFFFKMFDKTDYHGILSLGAIFRLISEHNFEYPKFYDKVYSLTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLSRCLLLAPIDAQEPILGLIRNLVIRHPNCSELVHREVPQTLYDD 358          
The following BLAST results are available for this feature:
BLAST of FC930757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NOC4L_CHICK6.089e-4649.70Nucleolar complex protein 4 homolog OS=Gallus gall... [more]
NOC4L_MOUSE2.314e-4549.71Nucleolar complex protein 4 homolog OS=Mus musculu... [more]
NOC4L_RAT6.732e-4548.54Nucleolar complex protein 4 homolog OS=Rattus norv... [more]
NOC4B_XENLA2.558e-4446.63Nucleolar complex protein 4 homolog B OS=Xenopus l... [more]
NOC41_XENLA3.341e-4445.55Nucleolar complex protein 4 homolog A OS=Xenopus l... [more]
NOC4L_HUMAN4.363e-4449.12Nucleolar complex protein 4 homolog OS=Homo sapien... [more]
NOC4L_DANRE5.699e-4445.31Nucleolar complex protein 4 homolog OS=Danio rerio... [more]
YG06_SCHPO1.360e-3743.50Uncharacterized protein C1604.06c OS=Schizosacchar... [more]
NOC4_YEAST4.835e-3542.61Nucleolar complex protein 4 OS=Saccharomyces cerev... [more]
YO93_CAEEL3.974e-2130.77Uncharacterized protein T20B12.3 OS=Caenorhabditis... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34108G01EF PostHarvP1 Citrus clementina cDNA clone C34108G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930757 ID=FC930757; Name=FC930757; organism=Citrus clementina; type=EST; length=697bp
GGAGTGGATCAGGAAGTTCATCTGAAGAAGGCAATCTCAAGGAGGCATCT
AAGAAGTCAAAAACAAAAGTTAAAATGCCCAAGGCCGAAAAATCTAACAA
TAATGCATTGTCTGCAGCCACTATATCCAAAAAGATGAAATCAAAGTTCA
CTAAAGCCTGGATTACATTTCTTAGGTTGCCACTACCTGTTGATATATAC
AAGGAGGTTCTTGTTACTCTTCATCGGGCAGTTATTCCTTTCTTGTCCAA
TCCCATCATGTTATGTGACTTTTTAACCCGATCATATGACATTGGTGGGG
TTGTCAGTGTCATGGCTCTTAGCAGTCTCTTTATCCTCATGACTCAACAT
GGTTTGGAGTATCCCAACTTCTATGAAAAACTTTATGCCCTATTGGTGCC
CTCTATCTTTATGGCAAAGCATAGGGCGAAATTTTTTGAGCTTCTTGATT
CTTGCCTGAGGTCACCACTTCTTCCGGCATACTTGGCAGCTGCTTTTGTG
AAGAAATTGAGTAGATTATCAATTTTGGTTCCTCCTTCAGGAGCATTAGT
TATTATGGCTTTGATTCACAACCTTTTGCGGAGGCATCCTTCAATCAACT
GTTTGCTGCACCGGGAAGATGGCAATGAGACTCACAATGATGATTCCAAG
GCAGAGAAGGAGATTGTTGATGCTGCGACTGTCGCNAATATATCCAG
back to top